7RAJ

Structure of PfCSP peptide 21 with antibody iGL-CIS43.D3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.317 
  • R-Value Work: 0.253 
  • R-Value Observed: 0.256 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Vaccination in a humanized mouse model elicits highly protective PfCSP-targeting anti-malarial antibodies.

Kratochvil, S.Shen, C.H.Lin, Y.C.Xu, K.Nair, U.Da Silva Pereira, L.Tripathi, P.Arnold, J.Chuang, G.Y.Melzi, E.Schon, A.Zhang, B.Dillon, M.Bonilla, B.Flynn, B.J.Kirsch, K.H.Kisalu, N.K.Kiyuka, P.K.Liu, T.Ou, L.Pancera, M.Rawi, R.Reveiz, M.Seignon, K.Wang, L.T.Waring, M.T.Warner, J.Yang, Y.Francica, J.R.Idris, A.H.Seder, R.A.Kwong, P.D.Batista, F.D.

(2021) Immunity 54: 2859-2876.e7

  • DOI: https://doi.org/10.1016/j.immuni.2021.10.017
  • Primary Citation of Related Structures:  
    7LKB, 7LKG, 7RAJ, 7RCS, 7RD3, 7RD4, 7RD9, 7RDA

  • PubMed Abstract: 

    Repeat antigens, such as the Plasmodium falciparum circumsporozoite protein (PfCSP), use both sequence degeneracy and structural diversity to evade the immune response. A few PfCSP-directed antibodies have been identified that are effective at preventing malaria infection, including CIS43, but how these repeat-targeting antibodies might be improved has been unclear. Here, we engineered a humanized mouse model in which B cells expressed inferred human germline CIS43 (iGL-CIS43) B cell receptors and used both vaccination and bioinformatic analysis to obtain variant CIS43 antibodies with improved protective capacity. One such antibody, iGL-CIS43.D3, was significantly more potent than the current best-in-class PfCSP-directed antibody. We found that vaccination with a junctional epitope peptide was more effective than full-length PfCSP at recruiting iGL-CIS43 B cells to germinal centers. Structure-function analysis revealed multiple somatic hypermutations that combinatorically improved protection. This mouse model can thus be used to understand vaccine immunogens and to develop highly potent anti-malarial antibodies.


  • Organizational Affiliation

    The Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
iGL-CIS43.D3 Fab Heavy chainA [auth H]226Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
iGL-CIS43.D3 Fab light chainB [auth L]220Homo sapiensMutation(s): 0 
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  • Reference Sequence

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ASN-PRO-ASP-PRO-ASN-ALA-ASN-PRO-ASN-VAL-ASP-PRO-ASN-ALA-ASNC [auth A]15Plasmodium falciparumMutation(s): 0 
UniProt
Find proteins for P02893 (Plasmodium falciparum)
Explore P02893 
Go to UniProtKB:  P02893
Entity Groups  
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UniProt GroupP02893
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.317 
  • R-Value Work: 0.253 
  • R-Value Observed: 0.256 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 37.281α = 90
b = 89.712β = 99.27
c = 72.044γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)--

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-15
    Type: Initial release
  • Version 1.1: 2021-12-22
    Changes: Database references
  • Version 1.2: 2023-10-18
    Changes: Data collection, Refinement description