Biological Assembly 1  

 3D View: Structure | 1D-3D View | Electron Density | Ligand Interaction

Global Symmetry: Dihedral - D2  (3D View)
Global Stoichiometry: Homo 8-mer - A8 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 178.68 kDa 
• Atom Count: 9632 
• Modelled Residue Count: 1176 
• Deposited Residue Count: 1560 
• Unique protein chains: 1

7P3Q

Streptomyces coelicolor dATP/ATP-loaded NrdR octamer

• PDB DOI: 10.2210/pdb7P3Q/pdb
• EM Map EMD-13182:EMDBEMDataResource

• Classification: DNA BINDING PROTEIN
• Organism(s): Streptomyces coelicolor A3(2)
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-07-08 Released: 2022-05-11 
• Deposition Author(s): Martinez-Carranza, M., Stenmark, P.
• Funding Organization(s): Swedish Research Council, Wenner-Gren Foundation, Cancerfonden

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.12 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 

Currently 7P3Q does not have a validation slider image.

Literature

Evolutionarily mobile ATP-cones control both transcription and activity of an essential enzyme family

Grinberg, I.R., Martinez-Carranza, M., Bimai, O., Nouairia, G., Lundin, D., Logan, D.T., Sjoberg, B.M., Stenmark, P.

To be published.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional repressor NrdR	A, E [auth B], B [auth C], F [auth D], C [auth E], G [auth F], D [auth G], H	195	Streptomyces coelicolor A3(2)	Mutation(s): 0  Gene Names: nrdR, SCO5804, SC4H2.25
UniProt
Find proteins for O69980 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)) Explore O69980  Go to UniProtKB:  O69980

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ATP (Subject of Investigation/LOI)	AA [auth F], DA [auth H], I [auth A], L [auth C], O [auth E], R [auth G], U [auth B], X [auth D]	ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N
DTP (Subject of Investigation/LOI)	BA [auth F], EA [auth H], J [auth A], M [auth C], P [auth E], S [auth G], V [auth B], Y [auth D]	2'-DEOXYADENOSINE 5'-TRIPHOSPHATE C10 H16 N5 O12 P3 SUYVUBYJARFZHO-RRKCRQDMSA-N
ZN	CA [auth F], FA [auth H], K [auth A], N [auth C], Q [auth E], T [auth G], W [auth B], Z [auth D]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.12 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Currently 7P3Q does not have a validation slider image.

Entry History & Funding Information

Deposition Data

• Deposited Date: 2021-07-08 
• Released Date: 2022-05-11 
Deposition Author(s): Martinez-Carranza, M., Stenmark, P.

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Funding Organization	Location	Grant Number
Swedish Research Council	Sweden	2018-03406
Swedish Research Council	Sweden	2019-01400
Wenner-Gren Foundation	Sweden	--
Cancerfonden	Sweden	20 1287 PjF
Cancerfonden	Sweden	2018/820

Revision History  

• Version 1.0: 2022-05-11
  Type: Initial release