7P37

Streptomyces coelicolor ATP-loaded NrdR

PDB DOI: 10.2210/pdb7P37/pdb
EM Map EMD-13178:EMDB EMDataResource

Classification: DNA BINDING PROTEIN
Organism(s): Streptomyces coelicolor A3(2)
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-07-07 Released: 2022-05-11
Deposition Author(s): Martinez-Carranza, M., Stenmark, P.
Funding Organization(s): Swedish Research Council, Wenner-Gren Foundation, Cancerfonden

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation

Currently 7P37 does not have a validation slider image.

This is version 1.0 of the entry. See complete history.

Literature

Evolutionarily mobile ATP-cones control both transcription and activity of an essential enzyme family

Grinberg, I.R., Martinez-Carranza, M., Bimai, O., Nouairia, G., Lundin, D., Logan, D.T., Sjoberg, B.M., Stenmark, P.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional repressor NrdR	A, G [auth B], D [auth C], J [auth D], B [auth E], A, G [auth B], D [auth C], J [auth D], B [auth E], H [auth F], E [auth G], K [auth H], C [auth I], I [auth J], F [auth K], L	195	Streptomyces coelicolor A3(2)	Mutation(s): 0 Gene Names: nrdR, SCO5804, SC4H2.25
UniProt
Find proteins for O69980 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)) Explore O69980 Go to UniProtKB: O69980
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O69980
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ATP (Subject of Investigation/LOI) Query on ATP Download Ideal Coordinates CCD File SDF format, chain BA [auth K] SDF format, chain CA [auth K] SDF format, chain EA [auth B] SDF format, chain FA [auth B] SDF format, chain IA [auth F] SDF format, chain KA [auth J] SDF format, chain LA [auth J] SDF format, chain M [auth A] SDF format, chain N [auth A] SDF format, chain NA [auth D] SDF format, chain OA [auth D] SDF format, chain P [auth E] SDF format, chain Q [auth E] SDF format, chain QA [auth H] SDF format, chain RA [auth H] SDF format, chain S [auth I] SDF format, chain T [auth I] SDF format, chain TA [auth L] SDF format, chain UA [auth L] SDF format, chain V [auth C] SDF format, chain W [auth C] SDF format, chain Y [auth G] SDF format, chain Z [auth G] SDF format, chain HA [auth F] MOL2 format, chain BA [auth K] MOL2 format, chain CA [auth K] MOL2 format, chain EA [auth B] MOL2 format, chain FA [auth B] MOL2 format, chain IA [auth F] MOL2 format, chain KA [auth J] MOL2 format, chain LA [auth J] MOL2 format, chain M [auth A] MOL2 format, chain N [auth A] MOL2 format, chain NA [auth D] MOL2 format, chain OA [auth D] MOL2 format, chain P [auth E] MOL2 format, chain Q [auth E] MOL2 format, chain QA [auth H] MOL2 format, chain RA [auth H] MOL2 format, chain S [auth I] MOL2 format, chain T [auth I] MOL2 format, chain TA [auth L] MOL2 format, chain UA [auth L] MOL2 format, chain V [auth C] MOL2 format, chain W [auth C] MOL2 format, chain Y [auth G] MOL2 format, chain Z [auth G] MOL2 format, chain HA [auth F]	BA [auth K], CA [auth K], EA [auth B], FA [auth B], HA [auth F], BA [auth K], CA [auth K], EA [auth B], FA [auth B], HA [auth F], IA [auth F], KA [auth J], LA [auth J], M [auth A], N [auth A], NA [auth D], OA [auth D], P [auth E], Q [auth E], QA [auth H], RA [auth H], S [auth I], T [auth I], TA [auth L], UA [auth L], V [auth C], W [auth C], Y [auth G], Z [auth G]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Ligand Interaction
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain AA [auth G] SDF format, chain DA [auth K] SDF format, chain GA [auth B] SDF format, chain JA [auth F] SDF format, chain MA [auth J] SDF format, chain O [auth A] SDF format, chain PA [auth D] SDF format, chain R [auth E] SDF format, chain U [auth I] SDF format, chain X [auth C] SDF format, chain SA [auth H] SDF format, chain VA [auth L] MOL2 format, chain AA [auth G] MOL2 format, chain DA [auth K] MOL2 format, chain GA [auth B] MOL2 format, chain JA [auth F] MOL2 format, chain MA [auth J] MOL2 format, chain O [auth A] MOL2 format, chain PA [auth D] MOL2 format, chain R [auth E] MOL2 format, chain U [auth I] MOL2 format, chain X [auth C] MOL2 format, chain SA [auth H] MOL2 format, chain VA [auth L]	AA [auth G], DA [auth K], GA [auth B], JA [auth F], MA [auth J], AA [auth G], DA [auth K], GA [auth B], JA [auth F], MA [auth J], O [auth A], PA [auth D], R [auth E], SA [auth H], U [auth I], VA [auth L], X [auth C]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

Currently 7P37 does not have a validation slider image.

Entry History & Funding Information

Deposition Data

Deposited Date: 2021-07-07
Released Date: 2022-05-11

Deposition Author(s):

Martinez-Carranza, M.

Stenmark, P.

Funding Organization	Location	Grant Number
Swedish Research Council	Sweden	2018-03406
Swedish Research Council	Sweden	2019-01400
Wenner-Gren Foundation	Sweden	--
Cancerfonden	Sweden	20 1287 PjF
Cancerfonden	Sweden	2018/820