7MZT

Borrelia burgdorferi BBK32-C in complex with an autolytic fragment of human C1r at 4.1A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.07 Å
  • R-Value Free: 0.372 
  • R-Value Work: 0.369 
  • R-Value Observed: 0.369 

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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

A Structural Basis for Inhibition of the Complement Initiator Protease C1r by Lyme Disease Spirochetes.

Garrigues, R.J.Powell-Pierce, A.D.Hammel, M.Skare, J.T.Garcia, B.L.

(2021) J Immunol 207: 2856-2867

  • DOI: https://doi.org/10.4049/jimmunol.2100815
  • Primary Citation of Related Structures:  
    7MZT

  • PubMed Abstract: 

    Complement evasion is a hallmark of extracellular microbial pathogens such as Borrelia burgdorferi , the causative agent of Lyme disease. Lyme disease spirochetes express nearly a dozen outer surface lipoproteins that bind complement components and interfere with their native activities. Among these, BBK32 is unique in its selective inhibition of the classical pathway. BBK32 blocks activation of this pathway by selectively binding and inhibiting the C1r serine protease of the first component of complement, C1. To understand the structural basis for BBK32-mediated C1r inhibition, we performed crystallography and size-exclusion chromatography-coupled small angle X-ray scattering experiments, which revealed a molecular model of BBK32-C in complex with activated human C1r. Structure-guided site-directed mutagenesis was combined with surface plasmon resonance binding experiments and assays of complement function to validate the predicted molecular interface. Analysis of the structures shows that BBK32 inhibits activated forms of C1r by occluding substrate interaction subsites (i.e., S1 and S1') and reveals a surprising role for C1r B loop-interacting residues for full inhibitory activity of BBK32. The studies reported in this article provide for the first time (to our knowledge) a structural basis for classical pathway-specific inhibition by a human pathogen.


  • Organizational Affiliation

    Department of Microbiology and Immunology, Brody School of Medicine, East Carolina University, Greenville, NC.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Complement C1r subcomponent heavy chain164Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P00736 (Homo sapiens)
Explore P00736 
Go to UniProtKB:  P00736
PHAROS:  P00736
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00736
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Complement C1r subcomponent light chain242Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P00736 (Homo sapiens)
Explore P00736 
Go to UniProtKB:  P00736
PHAROS:  P00736
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00736
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Fibronectin-binding protein BBK32C [auth I]148Borreliella burgdorferi B31Mutation(s): 0 
Gene Names: bbk32BB_K32
UniProt
Find proteins for O50835 (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31))
Explore O50835 
Go to UniProtKB:  O50835
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO50835
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download Ideal Coordinates CCD File 
D [auth B]2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 113.619α = 90
b = 96.989β = 90
c = 108.33γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data

  • Released Date: 2021-09-29 
  • Deposition Author(s): Garcia, B.L.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI146930

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-29
    Type: Initial release
  • Version 1.1: 2021-12-01
    Changes: Database references
  • Version 1.2: 2023-10-18
    Changes: Data collection, Refinement description