7MZT

Borrelia burgdorferi BBK32-C in complex with an autolytic fragment of human C1r at 4.1A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.07 Å
  • R-Value Free: 0.372 
  • R-Value Work: 0.369 
  • R-Value Observed: 0.369 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

A structural basis for inhibition of the complement initiator protease C1r by Lyme disease spirochetes

Garrigues, R.J.Powell, A.D.Hammel, M.Skare, J.T.Garcia, B.L.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Complement C1r subcomponent heavy chainA164Homo sapiensMutation(s): 0 
Gene Names: C1R
EC: 3.4.21.41
UniProt & NIH Common Fund Data Resources
Find proteins for P00736 (Homo sapiens)
Explore P00736 
Go to UniProtKB:  P00736
PHAROS:  P00736
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Complement C1r subcomponent light chainB242Homo sapiensMutation(s): 0 
Gene Names: C1R
EC: 3.4.21.41
UniProt & NIH Common Fund Data Resources
Find proteins for P00736 (Homo sapiens)
Explore P00736 
Go to UniProtKB:  P00736
PHAROS:  P00736
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Fibronectin-binding protein BBK32C [auth I]148Borreliella burgdorferi B31Mutation(s): 0 
Gene Names: bbk32BB_K32
UniProt
Find proteins for O50835 (Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680))
Explore O50835 
Go to UniProtKB:  O50835
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG (Subject of Investigation/LOI)
Query on NAG

Download Ideal Coordinates CCD File 
D [auth B]2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 113.619α = 90
b = 96.989β = 90
c = 108.33γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment  



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2021-05-24 
  • Released Date: 2021-09-29 
  • Deposition Author(s): Garcia, B.L.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI146930

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-29
    Type: Initial release