Download MendeleyCrystal Structure of Branched-chain amino acid aminotransferase from Giardia lamblia ATCC 50803
Abendroth, J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
7LV7 | pdb_00007lv7
Crystal Structure of Branched-chain amino acid aminotransferase from Giardia lamblia ATCC 50803
- PDB DOI: https://doi.org/10.2210/pdb7LV7/pdb
- Classification: TRANSFERASE
- Organism(s): Giardia lamblia ATCC 50803
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2021-02-24 Released: 2021-03-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.199 (Depositor), 0.200 (DCC)
- R-Value Work: 0.161 (Depositor), 0.160 (DCC)
- R-Value Observed: 0.162 (Depositor)
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Branched-chain amino acid aminotransferase | 376 | Giardia lamblia ATCC 50803 | Mutation(s): 0 Gene Names: GL50803_006184, GL50803_6184 EC: 2.6.1.42 |  | |
UniProt | |||||
Find proteins for E2RU99 (Giardia intestinalis (strain ATCC 50803 / WB clone C6)) Explore E2RU99 Go to UniProtKB: E2RU99 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E2RU99 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | E [auth A], G [auth B], J [auth C], L [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CL Query on CL | H [auth B], K [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| MG Query on MG | F [auth B], I [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| LLP Query on LLP | A, B, C, D | L-PEPTIDE LINKING | C14 H22 N3 O7 P |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.199 (Depositor), 0.200 (DCC)
- R-Value Work: 0.161 (Depositor), 0.160 (DCC)
- R-Value Observed: 0.162 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.99 | α = 90 |
| b = 243.18 | β = 118.918 |
| c = 60.5 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| MoRDa | phasing |
| PHENIX | model building |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2021-03-17 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2021-03-17
Type: Initial release - Version 1.1: 2023-10-18
Changes: Data collection, Database references, Refinement description - Version 1.2: 2023-11-15
Changes: Data collection
