7LV7 | pdb_00007lv7

Crystal Structure of Branched-chain amino acid aminotransferase from Giardia lamblia ATCC 50803

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d7lv7a1	Multi-domain proteins (alpha and beta)	D-aminoacid aminotransferase-like PLP-dependent enzymes	D-aminoacid aminotransferase-like PLP-dependent enzymes	automated matches	automated matches	Giardia lamblia (Giardia lamblia ATCC 50803 ) [TaxId: 184922 ],	SCOPe (2.08)
A	d7lv7a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Giardia lamblia (Giardia lamblia ATCC 50803 ) [TaxId: 184922 ],	SCOPe (2.08)
B	d7lv7b1	Multi-domain proteins (alpha and beta)	D-aminoacid aminotransferase-like PLP-dependent enzymes	D-aminoacid aminotransferase-like PLP-dependent enzymes	automated matches	automated matches	Giardia lamblia (Giardia lamblia ATCC 50803 ) [TaxId: 184922 ],	SCOPe (2.08)
B	d7lv7b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Giardia lamblia (Giardia lamblia ATCC 50803 ) [TaxId: 184922 ],	SCOPe (2.08)
C	d7lv7c1	Multi-domain proteins (alpha and beta)	D-aminoacid aminotransferase-like PLP-dependent enzymes	D-aminoacid aminotransferase-like PLP-dependent enzymes	automated matches	automated matches	Giardia lamblia (Giardia lamblia ATCC 50803 ) [TaxId: 184922 ],	SCOPe (2.08)
C	d7lv7c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Giardia lamblia (Giardia lamblia ATCC 50803 ) [TaxId: 184922 ],	SCOPe (2.08)
D	d7lv7d1	Multi-domain proteins (alpha and beta)	D-aminoacid aminotransferase-like PLP-dependent enzymes	D-aminoacid aminotransferase-like PLP-dependent enzymes	automated matches	automated matches	Giardia lamblia (Giardia lamblia ATCC 50803 ) [TaxId: 184922 ],	SCOPe (2.08)
D	d7lv7d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Giardia lamblia (Giardia lamblia ATCC 50803 ) [TaxId: 184922 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	D-aminoacid aminotransferase-like PLP-dependent enzymes	8102665	3001836	SCOP2B (2022-06-29)
B	SCOP2 Family	D-aminoacid aminotransferase-like PLP-dependent enzymes	8102664	4002874	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	D-aminoacid aminotransferase-like PLP-dependent enzymes	8102665	3001836	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	D-aminoacid aminotransferase-like PLP-dependent enzymes	8102665	3001836	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	D-aminoacid aminotransferase-like PLP-dependent enzymes	8102665	3001836	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DctP	e7lv7A1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: DctP	ECOD (v294.1)
B	Omp85	e7lv7B1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)
C	Omp85	e7lv7C1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)
D	Omp85	e7lv7D1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01063	Amino-transferase class IV (Aminotran_4)	Amino-transferase class IV	The D-amino acid transferases (D-AAT) are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the diff ...	The D-amino acid transferases (D-AAT) are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Branched-chain amino acid aminotransferase	transferase activity, transferring nitrogenous groups branched-chain-amino-acid:2-oxoglutarate transaminase activity transaminase activity amino acid transaminase activity transferase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	oxoacid metabolic process carboxylic acid metabolic process branched-chain amino acid metabolic process amino acid metabolic process primary metabolic process metabolic process cellular process small molecule metabolic process organic acid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR043132	Branched-chain-amino-acid aminotransferase-like, C-terminal	Homologous Superfamily
A, B, C, D	IPR043131	Branched-chain-amino-acid aminotransferase-like, N-terminal	Homologous Superfamily
A, B, C, D	IPR001544	Aminotransferase class IV	Family
A, B, C, D	IPR033939	Branched-chain aminotransferase	Family
A, B, C, D	IPR005786	Branched-chain amino acid aminotransferase II	Family
A, B, C, D	IPR036038	Aminotransferase-like, PLP-dependent enzymes	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D	LLP	Parent Component: LYS RESID: AA0119 PSI-MOD : N6-pyridoxal phosphate-L-lysine MOD:00128

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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