7I1B

HIGH-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF INTERLEUKIN-1 BETA IN SOLUTION BY THREE-AND FOUR-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Submitted: 32 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

High-resolution three-dimensional structure of interleukin 1 beta in solution by three- and four-dimensional nuclear magnetic resonance spectroscopy.

Clore, G.M.Wingfield, P.T.Gronenborn, A.M.

(1991) Biochemistry 30: 2315-2323

  • DOI: 10.1021/bi00223a005
  • Primary Citation of Related Structures:  
    7I1B, 6I1B

  • PubMed Abstract: 
  • The determination of the high-resolution three-dimensional solution structure of interleukin 1 beta (IL-1 beta), a protein of 153 residues and 17.4 kDa, which plays a central role in the immune and inflammatory responses, has been determined by heteronuclear (13C and 15N) three- and four-dimensional NMR spectroscopy ...

    The determination of the high-resolution three-dimensional solution structure of interleukin 1 beta (IL-1 beta), a protein of 153 residues and 17.4 kDa, which plays a central role in the immune and inflammatory responses, has been determined by heteronuclear (13C and 15N) three- and four-dimensional NMR spectroscopy. The structure is based on 3146 experimental restraints comprising 2780 distance and 366 torsion angle (phi, psi, and chi 1) restraints. A total of 32 simulated annealing structures are calculated, and the atomic RMS distribution about the mean coordinate positions is 0.41 +/- 0.04 A for the backbone atoms and 0.82 +/- 0.04 A for all atoms (excluding residue 1 at the N-terminus and residues 152 and 153 at the C-terminus, which are partially disordered). In the case of internal side chains with a surface accessibility of less than or equal to 40%, the atomic RMS distribution about the mean coordinate positions for all atoms is 0.49 +/- 0.03 A. IL-1 beta resembles a tetrahedron and is composed of 12 beta-strands arranged in three pseudosymmetric topological units, each of which comprises 5 strands. Analysis of the mutational data on IL-1 beta in the light of the three-dimensional structure suggests the presence of three distinct binding sites for the IL-1 receptor on the surface of the protein. It is suggested that each of the three immunoglobulin domains which comprise the extracellular portion of the IL-1 receptor recognizes one of these sites.


    Related Citations: 
    • Four-Dimensional 13C(Slash)13C-Edited Nuclear Overhauser Enhancement Spectroscopy of a Protein in Solution: Application to Interleukin-1Beta
      Clore, G.M., Kay, L.E., Bax, A., Gronenborn, A.M.
      (1991) Biochemistry 30: 12
    • Four-Dimensional Heteronuclear Triple-Resonance NMR Spectroscopy of Interleukin-1Beta in Solution
      Kay, L.E., Clore, G.M., Bax, A., Gronenborn, A.M.
      (1990) Science 249: 411
    • Assignment of the Side-Chain 1H and 13C Resonances of Interleukin-1Beta Using Double-and Triple-Resonance Heteronuclear Three-Dimensional NMR Spectroscopy
      Clore, G.M., Bax, A., Driscoll, P.C., Wingfield, P.T., Gronenborn, A.M.
      (1990) Biochemistry 29: 8172
    • Analysis of the Backbone Dynamics of Interleukin-1Beta Using Two-Dimensional Inverse Detected Heteronuclear 15N-1H NMR Spectroscopy
      Clore, G.M., Driscoll, P.C., Wingfield, P.T., Gronenborn, A.M.
      (1990) Biochemistry 29: 7387
    • Identification and Localization of Bound Internal Water in the Solution Structure of Interleukin 1Beta by Heteronuclear Three-Dimensional 1H Rotating-Frame Overhauser 15N-1H Multiple Quantum Coherence NMR Spectroscopy
      Clore, G.M., Bax, A., Wingfield, P.T., Gronenborn, A.M.
      (1990) Biochemistry 29: 5671
    • Low Resolution Structure of Interleukin-1Beta in Solution Derived from 1H-15N Heteronuclear Three-Dimensional Nuclear Magnetic Resonance Spectroscopy
      Clore, G.M., Driscoll, P.C., Wingfield, P.T., Gronenborn, A.M.
      (1990) J Mol Biol 214: 811
    • Determination of the Secondary Structure and Molecular Topology of Interleukin-1Beta by Use of Two-and Three-Dimensional Heteronuclear 15N-1H NMR Spectroscopy
      Driscoll, P.C., Gronenborn, A.M., Wingfield, P.T., Clore, G.M.
      (1990) Biochemistry 29: 4668
    • Complete Resonance Assignment for the Polypeptide Backbone of Interleukin 1Beta Using Three-Dimensional Heteronuclear NMR Spectroscopy
      Driscoll, P.C., Clore, G.M., Marion, D., Wingfield, P.T., Gronenborn, A.M.
      (1990) Biochemistry 29: 3542
    • Overcoming the Overlap Problem in the Assignment of 1H NMR Spectra of Larger Proteins by Use of Three-Dimensional Heteronuclear 1H-15N Hartmann-Hahn-Multiple Quantum Coherence and Nuclear Overhauser-Multiple Quantum Coherence Spectroscopy: Application to Interleukin 1Beta
      Marion, D., Driscoll, P.C., Kay, L.E., Wingfield, P.T., Bax, A., Gronenborn, A.M., Clore, G.M.
      (1989) Biochemistry 28: 6150

    Organizational Affiliation

    Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
INTERLEUKIN-1 BETAA153Homo sapiensMutation(s): 0 
Gene Names: IL1BIL1F2
UniProt & NIH Common Fund Data Resources
Find proteins for P01584 (Homo sapiens)
Explore P01584 
Go to UniProtKB:  P01584
PHAROS:  P01584
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Submitted: 32 
  • OLDERADO: 7I1B Olderado

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1992-10-15
    Type: Initial release
  • Version 1.1: 2008-03-25
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance