6J5I

Cryo-EM structure of the mammalian DP-state ATP synthase


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.34 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structure of the mammalian ATP synthase tetramer bound with inhibitory protein IF1.

Gu, J.Zhang, L.Zong, S.Guo, R.Liu, T.Yi, J.Wang, P.Zhuo, W.Yang, M.

(2019) Science 364: 1068-1075

  • DOI: https://doi.org/10.1126/science.aaw4852
  • Primary Citation of Related Structures:  
    6J54, 6J5A, 6J5I, 6J5J, 6J5K

  • PubMed Abstract: 
  • The mitochondrial adenosine triphosphate (ATP) synthase produces most of the ATP required by mammalian cells. We isolated porcine tetrameric ATP synthase and solved its structure at 6.2-angstrom resolution using a single-particle cryo-electron microscopy method ...

    The mitochondrial adenosine triphosphate (ATP) synthase produces most of the ATP required by mammalian cells. We isolated porcine tetrameric ATP synthase and solved its structure at 6.2-angstrom resolution using a single-particle cryo-electron microscopy method. Two classical V-shaped ATP synthase dimers lie antiparallel to each other to form an H-shaped ATP synthase tetramer, as viewed from the matrix. ATP synthase inhibitory factor subunit 1 (IF1) is a well-known in vivo inhibitor of mammalian ATP synthase at low pH. Two IF1 dimers link two ATP synthase dimers, which is consistent with the ATP synthase tetramer adopting an inhibited state. Within the tetramer, we refined structures of intact ATP synthase in two different rotational conformations at 3.34- and 3.45-Å resolution.


    Organizational Affiliation

    School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit alpha, mitochondrial
A, B, C
509Sus scrofaMutation(s): 0 
Gene Names: ATP5F1AATP5A1ATP5A2
Membrane Entity: Yes 
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit beta
D, E, F
480Sus scrofaMutation(s): 0 
Gene Names: ATP5F1B
EC: 7.1.2.2
Membrane Entity: Yes 
UniProt
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
ATPase inhibitor, mitochondrialG [auth J]83Sus scrofaMutation(s): 0 
Gene Names: ATP5IF1ATPIATPIF1
Membrane Entity: Yes 
UniProt
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit gammaH [auth G]272Sus scrofaMutation(s): 0 
Gene Names: ATP5F1C
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit delta, mitochondrialI [auth H]132Sus scrofaMutation(s): 0 
Gene Names: ATP5F1D
Membrane Entity: Yes 
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase F1 subunit epsilonJ [auth I]48Sus scrofaMutation(s): 0 
Gene Names: ATP5ECH242-247L10.5-002
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit O, mitochondrialK [auth S]187Sus scrofaMutation(s): 0 
Gene Names: ATP5POATP5O
Membrane Entity: Yes 
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase peripheral stalk-membrane subunit bL [auth b]209Sus scrofaMutation(s): 0 
Membrane Entity: Yes 
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase-coupling factor 6, mitochondrialM [auth c]70Sus scrofaMutation(s): 0 
Gene Names: ATP5PFATP5J
Membrane Entity: Yes 
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit d, mitochondrialN [auth d]147Sus scrofaMutation(s): 0 
Gene Names: ATP5PD
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit eO [auth e]63Sus scrofaMutation(s): 0 
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit f, mitochondrialP [auth f]87Sus scrofaMutation(s): 0 
Gene Names: ATP5MFATP5J2
Membrane Entity: Yes 
UniProt
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit gQ [auth g]84Sus scrofaMutation(s): 0 
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase membrane subunit DAPITR [auth i]42Sus scrofaMutation(s): 0 
Gene Names: ATP5MD
Membrane Entity: Yes 
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
subunit k analogS [auth k]29Sus scrofaMutation(s): 0 
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Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase protein 8T [auth 8]67Sus scrofaMutation(s): 0 
Gene Names: MT-ATP8ATP8ATPASE8MTATP8
Membrane Entity: Yes 
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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit aU [auth a]226Sus scrofaMutation(s): 0 
Gene Names: MT-ATP6ATP6ATPASE6MTATP6
Membrane Entity: Yes 
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Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
Mitochondrial H+ transporting ATP synthase subunit c isoform 172Sus scrofaMutation(s): 0 
Membrane Entity: Yes 
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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase membrane subunit 6.8PLDA [auth u]42Sus scrofaMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.34 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (China)China2017YFA0504600 and 2016YFA0501100
National Natural Science Foundation of ChinaChina31625008
National Natural Science Foundation of ChinaChina21532004, 31570733 and 31800620

Revision History  (Full details and data files)

  • Version 1.0: 2019-06-26
    Type: Initial release
  • Version 1.1: 2019-11-06
    Changes: Data collection, Other