6J5J

Cryo-EM structure of the mammalian E-state ATP synthase

  • Classification: MEMBRANE PROTEIN
  • Organism(s): Sus scrofa
  • Mutation(s): No 

  • Deposited: 2019-01-11 Released: 2019-06-26 
  • Deposition Author(s): Gu, J., Zhang, L., Yi, J., Yang, M.
  • Funding Organization(s): Ministry of Science and Technology (China), National Natural Science Foundation of China

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.45 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structure of the mammalian ATP synthase tetramer bound with inhibitory protein IF1.

Gu, J.Zhang, L.Zong, S.Guo, R.Liu, T.Yi, J.Wang, P.Zhuo, W.Yang, M.

(2019) Science 364: 1068-1075

  • DOI: 10.1126/science.aaw4852
  • Primary Citation of Related Structures:  
    6J54, 6J5J, 6J5I, 6J5K, 6J5A

  • PubMed Abstract: 
  • The mitochondrial adenosine triphosphate (ATP) synthase produces most of the ATP required by mammalian cells. We isolated porcine tetrameric ATP synthase and solved its structure at 6.2-angstrom resolution using a single-particle cryo-electron microscopy ...

    The mitochondrial adenosine triphosphate (ATP) synthase produces most of the ATP required by mammalian cells. We isolated porcine tetrameric ATP synthase and solved its structure at 6.2-angstrom resolution using a single-particle cryo-electron microscopy method. Two classical V-shaped ATP synthase dimers lie antiparallel to each other to form an H-shaped ATP synthase tetramer, as viewed from the matrix. ATP synthase inhibitory factor subunit 1 (IF1) is a well-known in vivo inhibitor of mammalian ATP synthase at low pH. Two IF1 dimers link two ATP synthase dimers, which is consistent with the ATP synthase tetramer adopting an inhibited state. Within the tetramer, we refined structures of intact ATP synthase in two different rotational conformations at 3.34- and 3.45-Å resolution.


    Organizational Affiliation

    School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit alpha, mitochondrial ABC509Sus scrofaMutation(s): 0 
Gene Names: ATP5F1AATP5A1ATP5A2
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
F1Fo synthase in E-state
Find proteins for P80021 (Sus scrofa)
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit beta DEF469Sus scrofaMutation(s): 0 
Gene Names: ATP5F1B
EC: 7.1.2.2
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
F1Fo synthase in E-state
Find proteins for K7GLT8 (Sus scrofa)
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
ATPase inhibitor, mitochondrial J83Sus scrofaMutation(s): 0 
Gene Names: ATP5IF1ATPIATPIF1
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
F1Fo synthase in E-state
Find proteins for Q29307 (Sus scrofa)
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit gamma G272Sus scrofaMutation(s): 0 
Gene Names: ATP5F1C
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
F1Fo synthase in E-state
Find proteins for A0A287A9I8 (Sus scrofa)
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit delta, mitochondrial H132Sus scrofaMutation(s): 0 
Gene Names: ATP5F1D
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
F1Fo synthase in E-state
Find proteins for A0A286ZYL7 (Sus scrofa)
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase F1 subunit epsilon I48Sus scrofaMutation(s): 0 
Gene Names: ATP5ECH242-247L10.5-002
Find proteins for A5GFX4 (Sus scrofa)
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit O, mitochondrial S187Sus scrofaMutation(s): 0 
Gene Names: ATP5POATP5O
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
F1Fo synthase in E-state
Find proteins for Q2EN81 (Sus scrofa)
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase peripheral stalk-membrane subunit b b209Sus scrofaMutation(s): 0 
Gene Names: ATP5PB
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
F1Fo synthase in E-state
Find proteins for A0A286ZYM6 (Sus scrofa)
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase-coupling factor 6, mitochondrial c70Sus scrofaMutation(s): 0 
Gene Names: ATP5PFATP5J
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
F1Fo synthase in E-state
Find proteins for P13618 (Sus scrofa)
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit d, mitochondrial d147Sus scrofaMutation(s): 0 
Gene Names: ATP5PD
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
F1Fo synthase in E-state
Find proteins for A0A287B4I0 (Sus scrofa)
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit e e63Sus scrofaMutation(s): 0 
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit f, mitochondrial f87Sus scrofaMutation(s): 0 
Gene Names: ATP5MFATP5J2
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
F1Fo synthase in E-state
Find proteins for Q95339 (Sus scrofa)
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit g g84Sus scrofaMutation(s): 0 
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase membrane subunit DAPIT i42Sus scrofaMutation(s): 0 
Gene Names: ATP5MD
Find proteins for F1RFD4 (Sus scrofa)
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
subunit k analog k29Sus scrofaMutation(s): 0 
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Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase protein 8 867Sus scrofaMutation(s): 0 
Gene Names: MT-ATP8ATP8ATPASE8MTATP8
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
F1Fo synthase in E-state
Find proteins for Q35914 (Sus scrofa)
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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit a a226Sus scrofaMutation(s): 0 
Gene Names: MT-ATP6ATP6ATPASE6MTATP6
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
F1Fo synthase in E-state
Find proteins for Q35915 (Sus scrofa)
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Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
Mitochondrial H+ transporting ATP synthase subunit c isoform 1 KLMNOPQR72Sus scrofaMutation(s): 0 
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
F1Fo synthase in E-state
Find proteins for Q4VT52 (Sus scrofa)
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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase membrane subunit 6.8PL u42Sus scrofaMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.45 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (China)China2017YFA0504600 and 2016YFA0501100
National Natural Science Foundation of ChinaChina31625008
National Natural Science Foundation of ChinaChina21532004, 31570733 and 31800620

Revision History 

  • Version 1.0: 2019-06-26
    Type: Initial release
  • Version 1.1: 2019-11-06
    Changes: Data collection, Other