6VQA

Mammalian V-ATPase from rat brain soluble V1 region rotational state 2 with SidK and ADP (from focused refinement)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report



Literature

Mammalian rat brain V-ATPase soluble V1 region state 1 with SidK and ADP - from focused refinement

Abbas, Y.M.Rubinstein, J.L.

To be published.

Macromolecules
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
V-type proton ATPase subunit B, brain isoformDEF511Rattus norvegicusMutation(s): 0 
Gene Names: Atp6v1b2Atp6b2Vat2
Find proteins for P62815 (Rattus norvegicus)
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Go to UniProtKB:  P62815
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  • Reference Sequence
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
V-type proton ATPase subunit E 1IJK226Rattus norvegicusMutation(s): 0 
Gene Names: Atp6v1e1
Find proteins for Q6PCU2 (Rattus norvegicus)
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Go to UniProtKB:  Q6PCU2
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  • Reference Sequence
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
V-type proton ATPase subunit GMNO118Rattus norvegicusMutation(s): 0 
Gene Names: 
Find proteins for Q8R2H0 (Rattus norvegicus)
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Go to UniProtKB:  Q8R2H0
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  • Reference Sequence
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
Effector protein SidKQRS301Legionella pneumophila subsp. pneumophila str. Philadelphia 1Mutation(s): 0 
Gene Names: lpg0968
Find proteins for Q5ZWW6 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513))
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  • Reference Sequence
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ATPase H+-transporting V1 subunit AABC617Rattus norvegicusMutation(s): 0 
Gene Names: Atp6v1arCG_52629
EC: 7.1.2.2
Find proteins for D4A133 (Rattus norvegicus)
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
ATPase H+-transporting V1 subunit DH247Rattus norvegicusMutation(s): 0 
Gene Names: Atp6v1drCG_61537
Find proteins for Q6P503 (Rattus norvegicus)
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Go to UniProtKB:  Q6P503
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ADP
Query on ADP

Download CCD File 
B
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download CCD File 
B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)Canada--

Revision History 

  • Version 1.0: 2020-03-18
    Type: Initial release