6VQA

Mammalian V-ATPase from rat brain soluble V1 region rotational state 2 with SidK and ADP (from focused refinement)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF02874e6vqaA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF02874ECOD (1.6)
APF22919e6vqaA4 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: PF22919ECOD (1.6)
APF16886e6vqaA3 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: PF16886ECOD (1.6)
APF00006,PF16886e6vqaA2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00006,PF16886ECOD (1.6)
BPF02874e6vqaB4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF02874ECOD (1.6)
BPF22919e6vqaB1 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: PF22919ECOD (1.6)
BPF16886e6vqaB2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: PF16886ECOD (1.6)
BPF00006,PF16886e6vqaB3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00006,PF16886ECOD (1.6)
CPF02874e6vqaC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF02874ECOD (1.6)
CPF22919e6vqaC4 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: PF22919ECOD (1.6)
CPF16886e6vqaC3 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: PF16886ECOD (1.6)
CPF00006,PF16886e6vqaC2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00006,PF16886ECOD (1.6)
DPF02874e6vqaD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF02874ECOD (1.6)
DPF22919e6vqaD2 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: PF22919ECOD (1.6)
DPF00006e6vqaD3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00006ECOD (1.6)
EPF02874e6vqaE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF02874ECOD (1.6)
EPF22919e6vqaE3 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: PF22919ECOD (1.6)
EPF00006e6vqaE2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00006ECOD (1.6)
FPF02874e6vqaF3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF02874ECOD (1.6)
FPF22919e6vqaF1 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: PF22919ECOD (1.6)
FPF00006e6vqaF2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00006ECOD (1.6)
G [auth H]PF01813e6vqaH1 A: alpha bundlesX: V-type proton ATPase subunit D (From Topology)H: V-type proton ATPase subunit D (From Topology)T: V-type proton ATPase subunit DF: PF01813ECOD (1.6)
H [auth I]PF01991e6vqaI2 A: a+b two layersX: FwdE/GAPDH domain-likeH: V-type ATPase subunit E (From Topology)T: V-type ATPase subunit EF: PF01991ECOD (1.6)
H [auth I]PF01991e6vqaI1 A: extended segmentsX: Helical region in V-type proton ATPase subunit E (From Topology)H: Helical region in V-type proton ATPase subunit E (From Topology)T: Helical region in V-type proton ATPase subunit EF: PF01991ECOD (1.6)
I [auth J]PF01991e6vqaJ1 A: a+b two layersX: FwdE/GAPDH domain-likeH: V-type ATPase subunit E (From Topology)T: V-type ATPase subunit EF: PF01991ECOD (1.6)
I [auth J]PF01991e6vqaJ2 A: extended segmentsX: Helical region in V-type proton ATPase subunit E (From Topology)H: Helical region in V-type proton ATPase subunit E (From Topology)T: Helical region in V-type proton ATPase subunit EF: PF01991ECOD (1.6)
J [auth K]PF01991e6vqaK2 A: a+b two layersX: FwdE/GAPDH domain-likeH: V-type ATPase subunit E (From Topology)T: V-type ATPase subunit EF: PF01991ECOD (1.6)
J [auth K]PF01991e6vqaK1 A: extended segmentsX: Helical region in V-type proton ATPase subunit E (From Topology)H: Helical region in V-type proton ATPase subunit E (From Topology)T: Helical region in V-type proton ATPase subunit EF: PF01991ECOD (1.6)
N [auth Q]F_UNCLASSIFIEDe6vqaQ1 A: alpha superhelicesX: Effector protein SidK (From Topology)H: Effector protein SidK (From Topology)T: Effector protein SidKF: F_UNCLASSIFIEDECOD (1.6)
O [auth R]F_UNCLASSIFIEDe6vqaR1 A: alpha superhelicesX: Effector protein SidK (From Topology)H: Effector protein SidK (From Topology)T: Effector protein SidKF: F_UNCLASSIFIEDECOD (1.6)
P [auth S]F_UNCLASSIFIEDe6vqaS1 A: alpha superhelicesX: Effector protein SidK (From Topology)H: Effector protein SidK (From Topology)T: Effector protein SidKF: F_UNCLASSIFIEDECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.Domain
A, B, C
PF16886ATPsynthase alpha/beta subunit N-term extension (ATP-synt_ab_Xtn)ATPsynthase alpha/beta subunit N-term extension- Family
A, B, C
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.Domain
D, E, F
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.Domain
D, E, F
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.Domain
G [auth H]PF01813ATP synthase subunit D (ATP-synt_D)ATP synthase subunit D- Family
H [auth I],
I [auth J],
J [auth K]
PF01991ATP synthase (E/31 kDa) subunit (vATP-synt_E)ATP synthase (E/31 kDa) subunit- Family
K [auth M],
L [auth N],
M [auth O]
PF03179Vacuolar (H+)-ATPase G subunit (V-ATPase_G)Vacuolar (H+)-ATPase G subunit- Coiled-coil

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
ATPase H+-transporting V1 subunit A
D, E, F
V-type proton ATPase subunit B, brain isoform
G [auth H]ATPase H+-transporting V1 subunit D
H [auth I],
I [auth J],
J [auth K]
V-type proton ATPase subunit E 1
K [auth M],
L [auth N],
M [auth O]
V-type proton ATPase subunit G
N [auth Q],
O [auth R],
P [auth S]
Effector protein SidK- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR022878V-type ATP synthase catalytic alpha chainFamily
A, B, C
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
A, B, C
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
A, B, C
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
A, B, C
IPR005725ATPase, V1 complex, subunit AFamily
A, B, C
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
A, B, C
IPR031686ATPsynthase alpha/beta subunit, N-terminal extensionDomain
A, B, C
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
A, B, C
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
D, E, F
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
D, E, F
IPR005723ATPase, V1 complex, subunit BFamily
D, E, F
IPR022879V-type ATP synthase regulatory subunit B/betaFamily
D, E, F
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
D, E, F
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
D, E, F
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
G [auth H]IPR002699ATPase, V1 complex, subunit DFamily
H [auth I],
I [auth J],
J [auth K]
IPR038495V-type ATPase subunit E, C-terminal domain superfamilyHomologous Superfamily
H [auth I],
I [auth J],
J [auth K]
IPR002842V-type ATPase subunit EFamily
K [auth M],
L [auth N],
M [auth O]
IPR005124Vacuolar (H+)-ATPase G subunitFamily