6TCE

Crystal structure of the GGCT site-bound MH1 domain of Smad5 containing a GGGS insertion in the Loop1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.208 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Unveiling the dimer/monomer propensities of Smad MH1-DNA complexes

Ruiz, L.Kaczmarska, Z.Gomes, T.Aragon, E.Torner, C.Freier, R.Baginski, B.Martin-Malpartida, P.Martin Garrido, N.Marquez, J.Cordeiro, T.Pluta, R.Macias, M.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Mothers against decapentaplegic homolog 5
A
134Homo sapiensMutation(s): 0 
Gene Names: SMAD5 (MADH5)
Find proteins for Q99717 (Homo sapiens)
Go to Gene View: SMAD5
Go to UniProtKB:  Q99717
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(P*TP*GP*CP*AP*GP*GP*CP*TP*AP*GP*CP*CP*TP*GP*CP*A)-3')B16Homo sapiens
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.208 
  • Space Group: I 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 106.123α = 90.00
b = 106.123β = 90.00
c = 82.395γ = 90.00
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
PHASERphasing
AutoPROCdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Spanish Ministry of Economy and CompetitivenessSpain--
European Commission--

Revision History 

  • Version 1.0: 2019-11-20
    Type: Initial release