6TBZ

Crystal structure of the MH1 domain of Smad5-Smad3 chimera construct bound to the GGCGC site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.782 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Unveiling the dimer/monomer propensities of Smad MH1-DNA complexes

Ruiz, L.Kaczmarska, Z.Gomes, T.Aragon, E.Torner, C.Freier, R.Baginski, B.Martin-Malpartida, P.Martin Garrido, N.Marquez, J.Cordeiro, T.Pluta, R.Macias, M.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Mothers against decapentaplegic homolog 5
A
131Gallus gallusMutation(s): 0 
Gene Names: SMAD5 (MADH5)
Find proteins for Q56I99 (Gallus gallus)
Go to Gene View: SMAD5
Go to UniProtKB:  Q56I99
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(P*TP*GP*CP*AP*GP*GP*CP*GP*CP*GP*CP*CP*TP*GP*CP*A)-3')B,C16Homo sapiens
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.782 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.192 
  • Space Group: P 32
Unit Cell:
Length (Å)Angle (°)
a = 53.145α = 90.00
b = 53.145β = 90.00
c = 83.154γ = 120.00
Software Package:
Software NamePurpose
AutoPROCdata scaling
PHASERphasing
XDSdata reduction
BUSTERrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Spanish Ministry of Economy and CompetitivenessSpain--
European Commission--

Revision History 

  • Version 1.0: 2019-11-20
    Type: Initial release
  • Version 1.1: 2019-12-11
    Type: Database references, Source and taxonomy, Structure summary