Macromolecule Content

Total Structure Weight: 206.18 kDa
Atom Count: 14407
Residue Count: 1821
Unique protein chains: 3

6RFD

Cryo-EM structure of the N-terminal DC repeat (NDC) of NDC-NDC chimera (human sequence) bound to 14-protofilament GDP-microtubule

DOI: 10.2210/pdb6RFD/pdb
EMDataResource: EMD-4863

Classification: CYTOSOLIC PROTEIN
Organism(s): Bos taurus, Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-04-12 Released: 2020-05-13
Deposition Author(s): Manka, S.W.
Funding Organization(s): Medical Research Council (United Kingdom)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.90 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation3D Report Full Report

Literature

TBC

Manka, S.W., Moores, C.A.

To be published.

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Tubulin alpha-1B chain	A, a	432	Bos taurus	Mutation(s): 0
Find proteins for P81947 (Bos taurus) Explore P81947 Go to UniProtKB: P81947
Protein Feature View
( Mouse scroll to zoom / Hold left click to move ) Reference Sequence

Find similar proteins by: Sequence | Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
Tubulin beta-2B chain	B, b	429	Bos taurus	Mutation(s): 0 Gene Names: TUBB2B
Find proteins for Q6B856 (Bos taurus) Explore Q6B856 Go to UniProtKB: Q6B856
Protein Feature View
( Mouse scroll to zoom / Hold left click to move ) Reference Sequence

Find similar proteins by: Sequence | Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
Neuronal migration protein doublecortin	N	99	Homo sapiens	Mutation(s): 0 Gene Names: DCX, DBCN, LISX
Find proteins for O43602 (Homo sapiens) Explore O43602 Go to UniProtKB: O43602
NIH Common Fund Data Resources
PHAROS O43602 GTEx ENSG00000077279
Protein Feature View
( Mouse scroll to zoom / Hold left click to move ) Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GTP Query on GTP Download CCD File	A, a	GUANOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₄ P₃ XKMLYUALXHKNFT-UUOKFMHZSA-N		Ligand Interaction
GDP Query on GDP Download CCD File	B, b	GUANOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₁ P₂ QGWNDRXFNXRZMB-UUOKFMHZSA-N		Ligand Interaction
MG Query on MG Download CCD File	A, a	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.90 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Deposited Date: 2019-04-12
Released Date: 2020-05-13

Deposition Author(s):

Funding Organization	Location	Grant Number
Medical Research Council (United Kingdom)	United Kingdom	MR/R000352/1

Revision History

Version 1.0: 2020-05-13
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.