Macromolecule Content

Total Structure Weight: 37.3 kDa
Atom Count: 2,226
Modelled Residue Count: 245
Deposited Residue Count: 316
Unique protein chains: 1

6R2F

Crystal structure of TEX12 F102A F109E V116A in an alternative conformation

PDB DOI: https://doi.org/10.2210/pdb6R2F/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2019-03-17 Released: 2020-04-01
Deposition Author(s): Dunce, J.M., Davies, O.R.
Funding Organization(s): Wellcome Trust, Royal Society

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.29 Å
R-Value Free: 0.262
R-Value Work: 0.238
R-Value Observed: 0.239

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Meiotic synaptonemal complex extension through fibrous assembly of SYCE2-TEX12

Dunce, J.M., Salmon, L.J., Davies, O.R.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Testis-expressed protein 12	A, B, C, D	79	Homo sapiens	Mutation(s): 3 Gene Names: TEX12
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BXU0 (Homo sapiens) Explore Q9BXU0 Go to UniProtKB: Q9BXU0
PHAROS: Q9BXU0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9BXU0
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MPD Query on MPD Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain G [auth B] SDF format, chain H [auth B] SDF format, chain I [auth C] SDF format, chain J [auth C] SDF format, chain K [auth C] SDF format, chain L [auth C] SDF format, chain M [auth D] SDF format, chain N [auth D] SDF format, chain O [auth D] SDF format, chain P [auth D] MOL2 format, chain E [auth A] MOL2 format, chain G [auth B] MOL2 format, chain H [auth B] MOL2 format, chain I [auth C] MOL2 format, chain J [auth C] MOL2 format, chain K [auth C] MOL2 format, chain L [auth C] MOL2 format, chain M [auth D] MOL2 format, chain N [auth D] MOL2 format, chain O [auth D] MOL2 format, chain P [auth D]	E [auth A], G [auth B], H [auth B], I [auth C], J [auth C], E [auth A], G [auth B], H [auth B], I [auth C], J [auth C], K [auth C], L [auth C], M [auth D], N [auth D], O [auth D], P [auth D]	(4S)-2-METHYL-2,4-PENTANEDIOL C₆ H₁₄ O₂ SVTBMSDMJJWYQN-YFKPBYRVSA-N		Ligand Interaction
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain Q [auth D] MOL2 format, chain F [auth A] MOL2 format, chain Q [auth D]	F [auth A], Q [auth D]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.29 Å
R-Value Free: 0.262
R-Value Work: 0.238
R-Value Observed: 0.239
Space Group: I 2₁ 2₁ 2₁
Diffraction Data: https://doi.org/10.18430/m36r2f

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.86	α = 90
b = 104.51	β = 90
c = 127.51	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
Aimless	data scaling
PHASER	phasing
AMPLE	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2020-04-01

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	104158/Z/14/Z
Royal Society	United Kingdom	RG170118

Revision History (Full details and data files)

Version 1.0: 2020-04-01
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.