Macromolecule Content

Total Structure Weight: 18.48 kDa
Atom Count: 1,536
Modelled Residue Count: 152
Deposited Residue Count: 158
Unique protein chains: 1

6HK9

Crystal structure of TEX12 F102A F109E V116A

PDB DOI: https://doi.org/10.2210/pdb6HK9/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2018-09-06 Released: 2019-09-18
Deposition Author(s): Dunce, J.M., Salmon, L.J., Davies, O.R.
Funding Organization(s): Wellcome Trust, Royal Society

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.45 Å
R-Value Free: 0.205
R-Value Work: 0.179
R-Value Observed: 0.181

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Synaptonemal complex central element extension through hierarchical assembly of SYCE2-TEX12 into alpha-fibres

Salmon, L.J., Dunce, J.M., Davies, O.R.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Testis-expressed protein 12	A, B	79	Homo sapiens	Mutation(s): 3 Gene Names: TEX12
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BXU0 (Homo sapiens) Explore Q9BXU0 Go to UniProtKB: Q9BXU0
PHAROS: Q9BXU0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9BXU0
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MRD Query on MRD Download Ideal Coordinates CCD File SDF format, chain L [auth B] MOL2 format, chain L [auth B]	L [auth B]	(4R)-2-METHYLPENTANE-2,4-DIOL C₆ H₁₄ O₂ SVTBMSDMJJWYQN-RXMQYKEDSA-N		Ligand Interaction
ACT Query on ACT Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain G [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A]	F [auth A], G [auth A]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Ligand Interaction
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth A] SDF format, chain E [auth A] SDF format, chain H [auth B] SDF format, chain I [auth B] SDF format, chain J [auth B] SDF format, chain K [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A] MOL2 format, chain H [auth B] MOL2 format, chain I [auth B] MOL2 format, chain J [auth B] MOL2 format, chain K [auth B]	C [auth A], D [auth A], E [auth A], H [auth B], I [auth B], C [auth A], D [auth A], E [auth A], H [auth B], I [auth B], J [auth B], K [auth B]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.45 Å
R-Value Free: 0.205
R-Value Work: 0.179
R-Value Observed: 0.181
Space Group: C 2 2 2₁
Diffraction Data: https://doi.org/10.18430/m36hk9

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.233	α = 90
b = 219.712	β = 90
c = 37.501	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
AMPLE	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2019-09-18

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	104158/Z/14/Z
Royal Society	United Kingdom	RG170118

Revision History (Full details and data files)

Version 1.0: 2019-09-18
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.