Macromolecule Content

Total Structure Weight: 16.34 kDa
Atom Count: 1,146
Modelled Residue Count: 125
Deposited Residue Count: 138
Unique protein chains: 1

6HK8

Crystal structure of TEX12 delta-Ctip

PDB DOI: https://doi.org/10.2210/pdb6HK8/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-09-06 Released: 2019-10-16
Deposition Author(s): Salmon, L.J., Davies, O.R.
Funding Organization(s): Wellcome Trust, Royal Society

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.11 Å
R-Value Free: 0.258
R-Value Work: 0.229
R-Value Observed: 0.231

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Synaptonemal complex central element extension through hierarchical assembly of SYCE2-TEX12 into alpha-fibres

Salmon, L.J., Dunce, J.M., Davies, O.R.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Testis-expressed protein 12	A, B	69	Homo sapiens	Mutation(s): 0 Gene Names: TEX12
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BXU0 (Homo sapiens) Explore Q9BXU0 Go to UniProtKB: Q9BXU0
PHAROS: Q9BXU0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9BXU0
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
DIO Query on DIO Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth A] SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain G [auth A] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A]	C [auth A], D [auth A], E [auth A], F [auth A], G [auth A]	1,4-DIETHYLENE DIOXIDE C₄ H₈ O₂ RYHBNJHYFVUHQT-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.11 Å
R-Value Free: 0.258
R-Value Work: 0.229
R-Value Observed: 0.231
Space Group: P 6₅ 2 2
Diffraction Data: https://doi.org/10.18430/m36hk8

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.97	α = 90
b = 47.97	β = 90
c = 210.98	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
AMPLE	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2019-10-16

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	104158/Z/14/Z
Royal Society	United Kingdom	RG170118

Revision History (Full details and data files)

Version 1.0: 2019-10-16
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.