6QYK
Structure of MBP-Mcl-1 in complex with compound 7a
- PDB DOI: https://doi.org/10.2210/pdb6QYK/pdb
- Classification: APOPTOSIS
- Organism(s): Escherichia coli, Homo sapiens
- Expression System: Escherichia coli BL21
- Mutation(s): Yes 
- Deposited: 2019-03-09 Released: 2019-08-07 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.266 
- R-Value Work: 0.219 
- R-Value Observed: 0.221 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1 | 518 | Escherichia coli, Homo sapiens This entity is chimeric | Mutation(s): 6  Gene Names: malE, Z5632, ECs5017, MCL1, BCL2L3 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P0AEX9 (Escherichia coli (strain K12)) Explore P0AEX9  Go to UniProtKB:  P0AEX9 | |||||
Find proteins for Q07820 (Homo sapiens) Explore Q07820  Go to UniProtKB:  Q07820 | |||||
PHAROS:  Q07820 GTEx:  ENSG00000143384  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | P0AEX9Q07820 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
JLB (Subject of Investigation/LOI) Query on JLB | C [auth A] | (2~{R})-2-[6-ethyl-5-(1~{H}-indol-5-yl)thieno[2,3-d]pyrimidin-4-yl]oxypropanoic acid C19 H17 N3 O3 S WBVIAMZVXIOLIK-SNVBAGLBSA-N |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900001 Query on PRD_900001 | B | alpha-maltose | Oligosaccharide / Nutrient |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.266 
- R-Value Work: 0.219 
- R-Value Observed: 0.221 
- Space Group: P 21 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 97.545 | α = 90 |
b = 133.748 | β = 90 |
c = 37.338 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
PDB_EXTRACT | data extraction |
XSCALE | data scaling |
MOLREP | phasing |
Entry History 
Deposition Data
- Released Date: 2019-08-07  Deposition Author(s): Dokurno, P., Szlavik, Z., Ondi, L., Csekei, M., Paczal, A., Szabo, Z.B., Radics, G., Murray, J., Davidson, J., Chen, I., Davis, B., Hubbard, R.E., Pedder, C., Surgenor, A.E., Smith, J., Robertson, A., LeToumelin-Braizat, G., Cauquil, N., Zarka, M., Demarles, D., Perron-Sierra, F., Geneste, O., Kotschy, A.
Revision History (Full details and data files)
- Version 1.0: 2019-08-07
Type: Initial release - Version 1.1: 2019-08-21
Changes: Data collection, Database references - Version 1.2: 2019-09-18
Changes: Data collection, Refinement description - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2024-01-24
Changes: Data collection, Database references, Refinement description, Structure summary