6QGI

Crystal structure of VP5 from Haloarchaeal pleomorphic virus 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.46 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.224 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The structure of a prokaryotic viral envelope protein expands the landscape of membrane fusion proteins.

El Omari, K.Li, S.Kotecha, A.Walter, T.S.Bignon, E.A.Harlos, K.Somerharju, P.De Haas, F.Clare, D.K.Molin, M.Hurtado, F.Li, M.Grimes, J.M.Bamford, D.H.Tischler, N.D.Huiskonen, J.T.Stuart, D.I.Roine, E.

(2019) Nat Commun 10: 846-846


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
VP5
A
533Halorubrum pleomorphic virus 2Mutation(s): 0 
Gene Names: 5
Find proteins for H9ABL9 (Halorubrum pleomorphic virus 2)
Go to UniProtKB:  H9ABL9
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.46 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.224 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 48.080α = 90.00
b = 93.220β = 90.00
c = 121.820γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
xia2data reduction
xia2data scaling
BUSTERrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomG1000099
Medical Research Council (United Kingdom)United KingdomMR/N00065X/1
Wellcome TrustUnited Kingdom090532/Z/09/Z
European Research CouncilUnited Kingdom649053
Academy of FinlandFinland283072
Academy of FinlandFinland255342

Revision History 

  • Version 1.0: 2019-02-27
    Type: Initial release