6J7V

Structure of HRPV6 VP5 fitted in the cryoEM density of the spike


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 16.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The structure of a prokaryotic viral envelope protein expands the landscape of membrane fusion proteins.

El Omari, K.Li, S.Kotecha, A.Walter, T.S.Bignon, E.A.Harlos, K.Somerharju, P.De Haas, F.Clare, D.K.Molin, M.Hurtado, F.Li, M.Grimes, J.M.Bamford, D.H.Tischler, N.D.Huiskonen, J.T.Stuart, D.I.Roine, E.

(2019) Nat Commun 10: 846-846

  • DOI: https://doi.org/10.1038/s41467-019-08728-7
  • Primary Citation of Related Structures:  
    6J7V, 6QGI, 6QGL

  • PubMed Abstract: 

    Lipid membrane fusion is an essential function in many biological processes. Detailed mechanisms of membrane fusion and the protein structures involved have been mainly studied in eukaryotic systems, whereas very little is known about membrane fusion in prokaryotes. Haloarchaeal pleomorphic viruses (HRPVs) have a membrane envelope decorated with spikes that are presumed to be responsible for host attachment and membrane fusion. Here we determine atomic structures of the ectodomains of the 57-kDa spike protein VP5 from two related HRPVs revealing a previously unreported V-shaped fold. By Volta phase plate cryo-electron tomography we show that VP5 is monomeric on the viral surface, and we establish the orientation of the molecules with respect to the viral membrane. We also show that the viral membrane fuses with the host cytoplasmic membrane in a process mediated by VP5. This sheds light on protein structures involved in prokaryotic membrane fusion.


  • Organizational Affiliation

    Division of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
VP5537Halorubrum pleomorphic virus 6Mutation(s): 0 
UniProt
Find proteins for H9ABP6 (Halorubrum pleomorphic virus 6)
Explore H9ABP6 
Go to UniProtKB:  H9ABP6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupH9ABP6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 16.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONDynamo

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research CouncilUnited Kingdom649053

Revision History  (Full details and data files)

  • Version 1.0: 2019-03-06
    Type: Initial release
  • Version 1.1: 2020-08-05
    Changes: Data collection
  • Version 1.2: 2024-03-27
    Changes: Data collection, Database references, Refinement description