6NXK

Ubiquitin binding variants


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.221 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

A Protein Engineering Approach for Uncovering Cryptic Ubiquitin-binding Sites: from a Ubiquitin-Variant Inhibitor of APC/C to K48 Chain Binding

Watson, E.R.Grace, C.R.R.Zhang, W.Miller, D.J.Davidson, I.F.Prabu, J.R.Yu, S.Bolhuis, D.L.Haselbach, D.Stark, H.Peters, J.-M.Brown, N.G.Sidhu, S.S.Schulman, B.A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Polyubiquitin-C
A, B
76Homo sapiensMutation(s): 0 
Gene Names: UBC
Find proteins for P0CG48 (Homo sapiens)
Go to Gene View: UBC
Go to UniProtKB:  P0CG48
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Anaphase-promoting complex subunit 2
C, D
90Homo sapiensMutation(s): 0 
Gene Names: ANAPC2 (APC2, KIAA1406)
Find proteins for Q9UJX6 (Homo sapiens)
Go to Gene View: ANAPC2
Go to UniProtKB:  Q9UJX6
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.221 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 58.893α = 90.00
b = 63.368β = 90.00
c = 100.135γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PHASERphasing
XDSdata reduction
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-01-15
    Type: Initial release