6N68

NMR solution structure of Protonectin (Agelaia pallipes pallipes) interacting with SDS micelles: an antimicrobial peptide with anticancer activity on breast cancer cells


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 40 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


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Literature

Protonectin peptides target lipids, act at the interface and selectively kill metastatic breast cancer cells while preserving morphological integrity.

Batista Martins, D.Fadel, V.Oliveira, F.D.Gaspar, D.Alvares, D.S.Castanho, M.A.R.B.Dos Santos Cabrera, M.P.

(2021) J Colloid Interface Sci 601: 517-530

  • DOI: 10.1016/j.jcis.2021.05.115
  • Primary Citation of Related Structures:  
    6N68

  • PubMed Abstract: 
  • Despite the need for innovative compounds as antimicrobial and anticancer agents, natural sources of peptides remain underexplored. Protonectin (PTN), a cationic dodecapeptide of pharmacological interest, presents large hydrophobicity that is associated with the tendency to aggregate and supposedly influences bioactivity ...

    Despite the need for innovative compounds as antimicrobial and anticancer agents, natural sources of peptides remain underexplored. Protonectin (PTN), a cationic dodecapeptide of pharmacological interest, presents large hydrophobicity that is associated with the tendency to aggregate and supposedly influences bioactivity. A disaggregating role was assigned to PTN' N-terminal fragment (PTN 1-6 ), which enhances the bioactivity of PTN in a 1:1 mixture (PTN/PTN 1-6 ). Spectroscopic techniques and model membranes (phospholipid bilayers and SDS micelles) revealed that environment-dependent aggregation is reduced for PTN/PTN 1-6 , but cytotoxicity of PTNs on MDA-MB-231 breast cancer showed the same CC 50 values around 16 µM and on MCF-10A epithelial breast cells 6 to 5-fold higher values, revealing a selective interaction. Since PTN 1-6 lacks activity on breast cells, its presence should differently affect PTN activity, suggesting that aggregation could modulate activity depending on the membrane characteristics. Indeed, increased partitioning and lytic activity of PTN/PTN 1-6 were found in model membranes independently of charge density, but affected by the curvature tendency. PTN and PTN/PTN 1-6 do not alter morphology and roughness of cancer cells, indicating a superficial interaction with membranes and consistent with results obtained in NMR experiments. Our results indicate that aggregation of PTNs depends on the membrane characteristics and modulates the activity of the peptides.


    Organizational Affiliation

    Departamento de Física, Universidade Estadual Paulista (UNESP), Instituto de Biociências Letras e Ciências Exatas (IBILCE), R. Cristóvão Colombo, 2265, 15054-000 São José do Rio Preto, SP, Brazil; Departamento de Química e Ciências Ambientais, Universidade Estadual Paulista (UNESP), Instituto de Biociências Letras e Ciências Exatas (IBILCE), R. Cristóvão Colombo, 2265, 15054-000 São José do Rio Preto, SP, Brazil. Electronic address: cabrera.marcia@gmail.com.



Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ProtonectinA13Agelaia pallipesMutation(s): 1 
Membrane Entity: Yes 
UniProt
Find proteins for P69437 (Agelaia pallipes pallipes)
Explore P69437 
Go to UniProtKB:  P69437
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP69437
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 40 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 
  • OLDERADO: 6N68 Olderado

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Sao Paulo Research Foundation (FAPESP)Brazil2012/24259-0

Revision History  (Full details and data files)

  • Version 1.0: 2020-06-03
    Type: Initial release
  • Version 1.1: 2021-06-16
    Changes: Database references