NMR solution structure of Protonectin (Agelaia pallipes pallipes) interacting with SDS micelles: an antimicrobial peptide with anticancer activity on breast cancer cells
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H TOCSY | 1 mM Protonectin, 100 mM Perdeuterated SDS | 90% H2O/10% D2O | 5.0 | 1 atm | 298 | Varian UNITY 600 | |
| 2 | 2D 1H-1H NOESY | 1 mM Protonectin, 100 mM Perdeuterated SDS | 90% H2O/10% D2O | 5.0 | 1 atm | 298 | Varian UNITY 600 | |
| 3 | 2D DQF-COSY | 1 mM Protonectin, 100 mM Perdeuterated SDS | 90% H2O/10% D2O | 5.0 | 1 atm | 298 | Varian UNITY 600 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | UNITY | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | CNS | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 40 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (target function) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | data analysis | CARA | 1.9.1.7 | Keller and Wuthrich |
| 2 | data analysis | CANDID | Herrmann, Guntert and Wuthrich | |
| 3 | structure calculation | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
| 4 | refinement | GROMACS | Berendsen, Herman | |
