6N68
NMR solution structure of Protonectin (Agelaia pallipes pallipes) interacting with SDS micelles: an antimicrobial peptide with anticancer activity on breast cancer cells
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1 mM Protonectin, 100 mM Perdeuterated SDS | 90% H2O/10% D2O | 5.0 | 1 atm | 298 | Varian UNITY 600 | |
2 | 2D 1H-1H NOESY | 1 mM Protonectin, 100 mM Perdeuterated SDS | 90% H2O/10% D2O | 5.0 | 1 atm | 298 | Varian UNITY 600 | |
3 | 2D DQF-COSY | 1 mM Protonectin, 100 mM Perdeuterated SDS | 90% H2O/10% D2O | 5.0 | 1 atm | 298 | Varian UNITY 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITY | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 40 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (target function) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | data analysis | CARA | 1.9.1.7 | Keller and Wuthrich |
2 | data analysis | CANDID | Herrmann, Guntert and Wuthrich | |
3 | structure calculation | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
4 | refinement | GROMACS | Berendsen, Herman |