6MVY

NavAb voltage-gated sodium channel, residues 1-226, crystallized in the presence of Class 1B Anti-arrhythmic drug Lidocaine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.002 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.204 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Fenestrations control resting-state block of a voltage-gated sodium channel.

Gamal El-Din, T.M.Lenaeus, M.J.Zheng, N.Catterall, W.A.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: 13111-13116


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ion transport protein
A, B
244Arcobacter butzleri (strain RM4018)Mutation(s): 1 
Find proteins for A8EVM5 (Arcobacter butzleri (strain RM4018))
Go to UniProtKB:  A8EVM5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
PX4
Query on PX4

Download SDF File 
Download CCD File 
A, B
1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
C36 H73 N O8 P
CITHEXJVPOWHKC-UUWRZZSWSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.002 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.204 
  • Space Group: I 4
Unit Cell:
Length (Å)Angle (°)
a = 126.596α = 90.00
b = 126.596β = 90.00
c = 192.219γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
HKL-2000data reduction
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-12-05
    Type: Initial release
  • Version 1.1: 2018-12-19
    Type: Data collection, Database references
  • Version 1.2: 2019-01-02
    Type: Data collection, Database references