6MVX

NavAb Voltage-gated Sodium Channel, I217C, in Complex with Class 1C Anti-arrhythmic Flecainide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.455 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.230 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Fenestrations control resting-state block of a voltage-gated sodium channel.

Gamal El-Din, T.M.Lenaeus, M.J.Zheng, N.Catterall, W.A.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: 13111-13116


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ion transport protein
A, B, C, D
285Arcobacter butzleri (strain RM4018)Mutation(s): 1 
Find proteins for A8EVM5 (Arcobacter butzleri (strain RM4018))
Go to UniProtKB:  A8EVM5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A, B, C, D
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
K4D
Query on K4D

Download SDF File 
Download CCD File 
A
Flecainide
N-{[(2R)-piperidin-2-yl]methyl}-2,5-bis(2,2,2-trifluoroethoxy)benzamide
C17 H20 F6 N2 O3
DJBNUMBKLMJRSA-LLVKDONJSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.455 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.230 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 177.525α = 90.00
b = 177.687β = 90.00
c = 192.923γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
HKL-2000data reduction
HKL-2000data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-12-05
    Type: Initial release
  • Version 1.1: 2018-12-19
    Type: Data collection, Database references
  • Version 1.2: 2019-01-02
    Type: Data collection, Database references