6MB2

Cryo-EM structure of the PYD filament of AIM2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Plasticity in PYD assembly revealed by cryo-EM structure of the PYD filament of AIM2.

Lu, A.Li, Y.Yin, Q.Ruan, J.Yu, X.Egelman, E.Wu, H.

(2015) Cell Discov 1: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Interferon-inducible protein AIM2
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
94Homo sapiensMutation(s): 0 
Gene Names: AIM2
Find proteins for O14862 (Homo sapiens)
Go to Gene View: AIM2
Go to UniProtKB:  O14862
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Green fluorescent protein
a, b, c, d, e, f, g, h, i, j, k, l, m, n, o
228Aequorea victoriaMutation(s): 0 
Gene Names: GFP
Find proteins for P42212 (Aequorea victoria)
Go to UniProtKB:  P42212
Small Molecules
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
a, b, c, d, e, f, g, h, i, j, k, l, m, n, o
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
CRO
Query on CRO
a, b, c, d, e, f, g, h, i, j, k, l, m, n, o
L-PEPTIDE LINKINGC15 H17 N3 O5THR, TYR, GLY
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-08-29 
  • Released Date: 2018-09-05 
  • Deposition Author(s): Lu, A., Li, Y., Wu, H.

Revision History 

  • Version 1.0: 2018-09-05
    Type: Initial release