6J5J | pdb_00006j5j

Cryo-EM structure of the mammalian E-state ATP synthase


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth I]SCOP2B Superfamilyepsilon subunit of mitochondrial F1F0-ATP synthase 8094377 3001799 SCOP2B (2022-06-29)
H [auth G]SCOP2 FamilyATP synthase gamma subunit-like 8093775 4000503 SCOP2 (2022-06-29)
H [auth G]SCOP2 SuperfamilyATP synthase gamma subunit-like 8093776 3000451 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
M [auth c]TetR_Ne6j5jc1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
L [auth b]AAAe6j5jb1 A: alpha arraysX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: AAAECOD (v295.2)
J [auth I]TetR_Ne6j5jI1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
I [auth H]TetR_Ne6j5jH1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
H [auth G]TetR_Ne6j5jG1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
FTetR_Ne6j5jF1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
ETetR_Ne6j5jE1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
DTetR_Ne6j5jD1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
Z [auth O]TetR_Ne6j5jO1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
Y [auth N]TetR_Ne6j5jN1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
X [auth M]TetR_Ne6j5jM1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
W [auth L]TetR_Ne6j5jL1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
V [auth K]TetR_Ne6j5jK1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
CA [auth R]TetR_Ne6j5jR1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
BA [auth Q]TetR_Ne6j5jQ1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
AA [auth P]TetR_Ne6j5jP1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
U [auth a]7tm_1e6j5ja1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Class I glutamine amidotransferase-likeF: 7tm_1ECOD (v295.2)
N [auth d]AAAe6j5jd1 A: alpha arraysX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: AAAECOD (v295.2)
CTetR_Ne6j5jC1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
BTetR_Ne6j5jB1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
ATetR_Ne6j5jA1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
J [auth I]1.10.1620.20 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain Chain: ICATH (utative)
I [auth H]2.60.15.10 Mainly Beta Sandwich ATP Synthase domain 1CATH (utative)
I [auth H]1.20.5.440 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces ATP synthase delta/epsilon subunit, C-terminal domainCATH (utative)
H [auth G]1.10.287.80 Mainly Alpha Orthogonal Bundle Helix Hairpins ATP synthase, gamma subunit, helix hairpin domainCATH (utative)
H [auth G]3.40.1380.10 Alpha Beta 3-Layer(aba) Sandwich Pyruvate Kinase Chain: A, domain 1CATH (utative)
F2.40.10.170 Mainly Beta Beta Barrel Thrombin, subunit H CATH (utative)
F3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
F1.10.1140.10 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain Chain D, domain3CATH (utative)
E2.40.10.170 Mainly Beta Beta Barrel Thrombin, subunit H CATH (utative)
E3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
E1.10.1140.10 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain Chain D, domain3CATH (utative)
D2.40.10.170 Mainly Beta Beta Barrel Thrombin, subunit H CATH (utative)
D3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
D1.10.1140.10 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain Chain D, domain3CATH (utative)
Z [auth O]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (utative)
Y [auth N]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (utative)
X [auth M]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (utative)
W [auth L]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (utative)
V [auth K]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (utative)
CA [auth R]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (utative)
BA [auth Q]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (utative)
AA [auth P]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (utative)
C2.40.30.20 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (utative)
C3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
C1.20.150.20 Mainly Alpha Up-down Bundle Lysin ATP synthase alpha/beta chain, C-terminal domainCATH (utative)
B2.40.30.20 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (utative)
B3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
B1.20.150.20 Mainly Alpha Up-down Bundle Lysin ATP synthase alpha/beta chain, C-terminal domainCATH (utative)
A2.40.30.20 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (utative)
A3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
A1.20.150.20 Mainly Alpha Up-down Bundle Lysin ATP synthase alpha/beta chain, C-terminal domainCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K [auth S]PF00213ATP synthase delta (OSCP) subunit (OSCP)ATP synthase delta (OSCP) subunit- Family
G [auth J]PF04568Mitochondrial ATPase inhibitor, IATP (IATP)Mitochondrial ATPase inhibitor, IATP- Family
A, B, C
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Domain
A, B, C
PF00119ATP synthase A chain (ATP-synt_A)ATP synthase A chainDomain
A, B, C
PF00306ATP synthase alpha/beta chain, C terminal domain (ATP-synt_ab_C)ATP synthase alpha/beta chain, C terminal domainDomain
A, B, C
PF05511Mitochondrial ATP synthase coupling factor 6 (ATP-synt_F6)Mitochondrial ATP synthase coupling factor 6- Family
A, B, C
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Domain
A, B, C
PF05405Mitochondrial ATP synthase B chain precursor (ATP-synt_B) (Mt_ATP-synt_B)Mitochondrial ATP synthase B chain precursor (ATP-synt_B)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
M [auth c]ATP synthase-coupling factor 6, mitochondrial
L [auth b]ATP synthase peripheral stalk-membrane subunit b
K [auth S]ATP synthase subunit O, mitochondrial
J [auth I]ATP synthase F1 subunit epsilon -
I [auth H]ATP synthase subunit delta, mitochondrial -
H [auth G]ATP synthase subunit gamma -
G [auth J]ATPase inhibitor, mitochondrial
D, E, F
ATP synthase subunit beta -
DA [auth u]ATP synthase membrane subunit 6.8PL---
Mitochondrial H+ transporting ATP synthase subunit c isoform 1
U [auth a]ATP synthase subunit a
T [auth 8]ATP synthase protein 8
S [auth k]subunit k analog---
R [auth i]ATP synthase membrane subunit DAPIT- -
Q [auth g]ATP synthase subunit g---
P [auth f]ATP synthase subunit f, mitochondrial- -
O [auth e]ATP synthase subunit e---
N [auth d]ATP synthase subunit d, mitochondrial
A, B, C
ATP synthase subunit alpha, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
M [auth c]IPR036204ATP synthase-coupling factor 6 superfamily, mitochondrialHomologous Superfamily
M [auth c]IPR008387ATP synthase-coupling factor 6, mitochondrialFamily
L [auth b]IPR008688ATP synthase, F0 complex, subunit B/MI25Family
L [auth b]IPR013837ATP synthase, F0 complex, subunit BFamily
K [auth S]IPR020781ATPase, OSCP/delta subunit, conserved siteConserved Site
K [auth S]IPR000711ATPase, OSCP/delta subunitFamily
K [auth S]IPR026015F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamilyHomologous Superfamily
J [auth I]IPR036742ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrialHomologous Superfamily
J [auth I]IPR006721ATP synthase, F1 complex, epsilon subunit, mitochondrialFamily
I [auth H]IPR036771F0F1 ATP synthase delta/epsilon subunit, N-terminalHomologous Superfamily
I [auth H]IPR036794ATP synthase delta/epsilon subunit, C-terminal domain superfamilyHomologous Superfamily
I [auth H]IPR020546ATP synthase, F1 complex, delta/epsilon subunit, N-terminalDomain
I [auth H]IPR048937F1F0-ATP synthase delta subunit, C-terminal domain, metazoanDomain
I [auth H]IPR001469ATP synthase, F1 complex, delta/epsilon subunitFamily
H [auth G]IPR023632ATP synthase, F1 complex, gamma subunit conserved siteConserved Site
H [auth G]IPR000131ATP synthase, F1 complex, gamma subunitFamily
H [auth G]IPR035968ATP synthase, F1 complex, gamma subunit superfamilyHomologous Superfamily
G [auth J]IPR007648Mitochondrial ATPase inhibitorFamily
D, E, F
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
D, E, F
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
D, E, F
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
D, E, F
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
D, E, F
IPR050053ATPase alpha/beta chainsFamily
D, E, F
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
D, E, F
IPR055190ATP synthase A/B type, C-terminal domainDomain
D, E, F
IPR003593AAA+ ATPase domainDomain
D, E, F
IPR005722ATP synthase, F1 complex, beta subunitFamily
D, E, F
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
IPR038662F1F0 ATP synthase subunit C superfamilyHomologous Superfamily
IPR020537ATP synthase, F0 complex, subunit C, DCCD-binding siteBinding Site
IPR000454ATP synthase, F0 complex, subunit CFamily
IPR002379V-ATPase proteolipid subunit C-like domainDomain
U [auth a]IPR023011ATP synthase, F0 complex, subunit A, active siteActive Site
U [auth a]IPR000568ATP synthase, F0 complex, subunit AFamily
U [auth a]IPR035908ATP synthase, F0 complex, subunit A superfamilyHomologous Superfamily
U [auth a]IPR045083ATP synthase, F0 complex, subunit A, bacterial/mitochondriaFamily
T [auth 8]IPR039017ATP synthase protein 8, mammalsFamily
T [auth 8]IPR001421ATP synthase F(0) complex subunit 8Family
R [auth i]IPR009125ATP synthase membrane subunit KFamily
P [auth f]IPR019344Mitochondrial F1-F0 ATP synthase subunit F, predictedFamily
N [auth d]IPR036228ATP synthase, F0 complex, subunit D superfamily, mitochondrialHomologous Superfamily
N [auth d]IPR008689ATP synthase, F0 complex, subunit D, mitochondrialFamily
A, B, C
IPR038376ATP synthase, alpha subunit, C-terminal domain superfamilyHomologous Superfamily
A, B, C
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
A, B, C
IPR033732ATP synthase, F1 complex, alpha subunit nucleotide-binding domainDomain
A, B, C
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
A, B, C
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
A, B, C
IPR000793ATP synthase, alpha subunit, C-terminalDomain
A, B, C
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
A, B, C
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
A, B, C
IPR005294ATP synthase, F1 complex, alpha subunitFamily
A, B, C
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily