6IGK

Crystal Structure of human ETB receptor in complex with Endothelin-3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structures of human ETBreceptor provide mechanistic insight into receptor activation and partial activation.

Shihoya, W.Izume, T.Inoue, A.Yamashita, K.Kadji, F.M.N.Hirata, K.Aoki, J.Nishizawa, T.Nureki, O.

(2018) Nat Commun 9: 4711-4711


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Endothelin receptor type B,Endolysin,Endothelin receptor type B
A
498Homo sapiensEnterobacteria phage RB59
This entity is chimeric
Mutation(s): 10 
Gene Names: EDNRB (ETRB), e
EC: 3.2.1.17
Find proteins for P24530 (Homo sapiens)
Go to Gene View: EDNRB
Go to UniProtKB:  P24530
Find proteins for A0A097J809 (Enterobacteria phage RB59)
Go to UniProtKB:  A0A097J809
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Endothelin-3
B
21Homo sapiensMutation(s): 0 
Gene Names: EDN3
Find proteins for P14138 (Homo sapiens)
Go to Gene View: EDN3
Go to UniProtKB:  P14138
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OLC
Query on OLC

Download SDF File 
Download CCD File 
A
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
 Ligand Interaction
CIT
Query on CIT

Download SDF File 
Download CCD File 
A
CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.183 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 65.550α = 90.00
b = 172.280β = 90.00
c = 121.330γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PDB_EXTRACTdata extraction
PHASERphasing
XSCALEdata scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-11-21
    Type: Initial release