6GP2

Ribonucleotide Reductase class Ie R2 from Mesoplasma florum, DOPA-active form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.154 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Metal-free ribonucleotide reduction powered by a DOPA radical in Mycoplasma pathogens.

Srinivas, V.Lebrette, H.Lundin, D.Kutin, Y.Sahlin, M.Lerche, M.Eirich, J.Branca, R.M.M.Cox, N.Sjoberg, B.M.Hogbom, M.

(2018) Nature 563: 416-420


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ribonucleoside-diphosphate reductase beta chain
A, B
345Mesoplasma florum (strain ATCC 33453 / NBRC 100688 / NCTC 11704 / L1)Mutation(s): 0 
Find proteins for Q6F0T5 (Mesoplasma florum (strain ATCC 33453 / NBRC 100688 / NCTC 11704 / L1))
Go to UniProtKB:  Q6F0T5
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A, B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
DAH
Query on DAH
A, B
L-PEPTIDE LINKINGC9 H11 N O4PHE
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.154 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 176.162α = 90.00
b = 53.744β = 108.58
c = 79.284γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXrefinement
XDSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swedish Research CouncilSweden2017-04018
European Research CouncilSwedenHIGH-GEAR 724394
Knut and Alice Wallenberg FoundationSweden2012.0233
Knut and Alice Wallenberg FoundationSweden2017.0275

Revision History 

  • Version 1.0: 2018-08-22
    Type: Initial release
  • Version 1.1: 2018-11-07
    Type: Data collection, Database references
  • Version 1.2: 2018-11-21
    Type: Data collection, Database references
  • Version 1.3: 2018-11-28
    Type: Data collection, Database references