6FX4

Disulfide between E3 HECT liagse Smurf2 and Ubiquitin G76C


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.187 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

beta-Sheet Augmentation Is a Conserved Mechanism of Priming HECT E3 Ligases for Ubiquitin Ligation.

Jackl, M.Stollmaier, C.Strohaker, T.Hyz, K.Maspero, E.Polo, S.Wiesner, S.

(2018) J. Mol. Biol. 430: 3218-3233


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
E3 ubiquitin-protein ligase SMURF2
A, C
122Homo sapiensMutation(s): 3 
Gene Names: SMURF2
EC: 2.3.2.26
Find proteins for Q9HAU4 (Homo sapiens)
Go to Gene View: SMURF2
Go to UniProtKB:  Q9HAU4
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Polyubiquitin-B
B, D
76Daphnia magnaMutation(s): 0 
Find proteins for A0A162CSN9 (Daphnia magna)
Go to UniProtKB:  A0A162CSN9
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, C
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.187 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 38.630α = 108.92
b = 45.950β = 94.43
c = 70.460γ = 106.75
Software Package:
Software NamePurpose
SCALAdata scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Max Planck SocietyGermany--

Revision History 

  • Version 1.0: 2018-07-11
    Type: Initial release
  • Version 1.1: 2018-07-18
    Type: Data collection, Structure summary
  • Version 1.2: 2018-08-29
    Type: Data collection, Database references