6F1R

Tetragonal Lysozyme crystallized at 298 K and pH 4.5 with phosphate bound: control experiment

  • Classification: HYDROLASE
  • Organism(s): Gallus gallus

  • Deposited: 2017-11-22 Released: 2018-05-09 
  • Deposition Author(s): Camara-Artigas, A.
  • Funding Organization(s): Spanish Ministry of Economy and Competitiveness 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.164 
  • R-Value Work: 0.154 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Orthorhombic lysozyme crystallization at acidic pH values driven by phosphate binding.

Plaza-Garrido, M.Salinas-Garcia, M.C.Camara-Artigas, A.

(2018) Acta Crystallogr D Struct Biol 74: 480-489


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lysozyme C
A
129Gallus gallusMutation(s): 0 
Gene Names: LYZ
EC: 3.2.1.17
Find proteins for P00698 (Gallus gallus)
Go to Gene View: LYZ
Go to UniProtKB:  P00698
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.164 
  • R-Value Work: 0.154 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 78.694α = 90.00
b = 78.694β = 90.00
c = 37.660γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
XDSdata reduction
PHENIXrefinement
PHASERphasing
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-11-22 
  • Released Date: 2018-05-09 
  • Deposition Author(s): Camara-Artigas, A.

Funding OrganizationLocationGrant Number
Spanish Ministry of Economy and CompetitivenessSpainBIO2016-78020-R

Revision History 

  • Version 1.0: 2018-05-09
    Type: Initial release