6EHZ | pdb_00006ehz

NMR solution structure of murine CXCL12 gamma isoform

PDB DOI: https://doi.org/10.2210/pdb6EHZ/pdb
BMRB: 34176

Classification: CYTOKINE
Organism(s): Mus musculus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2017-09-15 Released: 2018-10-10
Deposition Author(s): Laguri, C., Lortat-Jacob, H., SImorre, J.P.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 20
Conformers Submitted: 20
Selection Criteria: all calculated structures submitted

wwPDB Validation 3D Report Full Report

Validation slider image for 6EHZ

This is version 1.4 of the entry. See complete history.

Literature

Deciphering the structural attributes of protein-heparan sulfate interactions using chemo-enzymatic approaches and NMR spectroscopy

Prechoux, A., Simorre, J.P., Lortat-Jacob, H., Laguri, C.

(2021) Glycobiology

DOI: https://doi.org/10.1093/glycob/cwab012

Macromolecule Content

Total Structure Weight: 11.61 kDa
Atom Count: 813
Modeled Residue Count: 98
Deposited Residue Count: 98
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Stromal cell-derived factor 1	A	98	Mus musculus	Mutation(s): 0 Gene Names: Cxcl12
UniProt & NIH Common Fund Data Resources
Find proteins for H7BX38 (Mus musculus) Explore H7BX38 Go to UniProtKB: H7BX38
IMPC: MGI:103556
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	H7BX38
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 20
Conformers Submitted: 20
Selection Criteria: all calculated structures submitted

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2018-10-10

Deposition Author(s):

Lortat-Jacob, H.

Revision History (Full details and data files)

Version 1.0: 2018-10-10
Type: Initial release
Version 1.1: 2019-05-08
Changes: Data collection, Structure summary
Version 1.2: 2021-03-17
Changes: Database references
Version 1.3: 2023-06-14
Changes: Database references, Other
Version 1.4: 2024-11-06
Changes: Data collection, Database references, Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.