6EHZ | pdb_00006ehz

NMR solution structure of murine CXCL12 gamma isoform

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EF-hand_8	e6ehzA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: EF-hand_8	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00048	Small cytokines (intecrine/chemokine), interleukin-8 like (IL8)	Small cytokines (intecrine/chemokine), interleukin-8 like	Includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Stromal cell-derived factor 1	binding molecular function activator activity signaling receptor binding G protein-coupled receptor binding signaling receptor activator activity protein binding cytokine receptor binding chemokine activity molecular function regulator activity cytokine activity signaling receptor regulator activity chemokine receptor binding receptor ligand activity growth factor activity binding molecular function activator activity signaling receptor binding G protein-coupled receptor binding signaling receptor activator activity protein binding cytokine receptor binding chemokine activity molecular function regulator activity cytokine activity signaling receptor regulator activity chemokine receptor binding receptor ligand activity growth factor activity CXCR chemokine receptor binding cell adhesion molecule binding protein-containing complex binding integrin binding	adult locomotory behavior behavior multicellular organismal process adult behavior locomotory behavior response to stimulus response to hormone response to chemical response to endogenous stimulus response to peptide hormone response to oxygen-containing compound response to nitrogen compound detection of external stimulus system process adult locomotory behavior behavior multicellular organismal process adult behavior locomotory behavior response to stimulus response to hormone response to chemical response to endogenous stimulus response to peptide hormone response to oxygen-containing compound response to nitrogen compound detection of external stimulus system process detection of mechanical stimulus involved in sensory perception of pain nervous system process response to mechanical stimulus response to external stimulus sensory perception of pain detection of mechanical stimulus involved in sensory perception sensory perception of mechanical stimulus detection of abiotic stimulus detection of stimulus sensory perception detection of mechanical stimulus response to abiotic stimulus detection of stimulus involved in sensory perception immune response immune system process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process integrin activation cellular component organization or biogenesis response to ultrasound axon extension positive regulation of nervous system development positive regulation of locomotion regulation of growth regulation of cellular process axonogenesis regulation of cellular component size developmental growth cell projection organization regulation of cell differentiation regulation of neurogenesis neuron projection development positive regulation of chemotaxis regulation of cell development positive regulation of axon extension involved in axon guidance positive regulation of developmental process multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis taxis cell differentiation anatomical structure development positive regulation of cell projection organization regulation of biological quality positive regulation of developmental growth system development developmental process chemotaxis regulation of biological process regulation of cell projection organization positive regulation of cell development nervous system development developmental growth involved in morphogenesis generation of neurons regulation of response to stimulus regulation of locomotion positive regulation of multicellular organismal process regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization cellular developmental process regulation of developmental process regulation of response to external stimulus plasma membrane bounded cell projection morphogenesis positive regulation of biological process cell development cell growth cell morphogenesis regulation of axon extension regulation of nervous system development positive regulation of response to stimulus neurogenesis regulation of axon extension involved in axon guidance regulation of extent of cell growth positive regulation of response to external stimulus positive regulation of cell differentiation regulation of axonogenesis positive regulation of neurogenesis regulation of multicellular organismal process axon extension involved in axon guidance positive regulation of axon extension positive regulation of cellular process positive regulation of axonogenesis regulation of anatomical structure morphogenesis locomotion regulation of cell size neuron projection extension regulation of multicellular organismal development regulation of developmental growth plasma membrane bounded cell projection organization developmental cell growth biological regulation growth axon guidance positive regulation of cell growth axon development regulation of chemotaxis regulation of cell growth cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis positive regulation of growth neuron projection guidance neuron development regulation of plasma membrane bounded cell projection organization regulation of anatomical structure size cellular response to stimulus cell surface receptor signaling pathway chemokine (C-X-C motif) ligand 12 signaling pathway signaling CXCL12-activated CXCR4 signaling pathway response to cytokine response to chemokine cytokine-mediated signaling pathway cellular response to chemokine chemokine-mediated signaling pathway cell communication response to peptide G protein-coupled receptor signaling pathway cellular response to cytokine stimulus signal transduction C-X-C chemokine receptor CXCR4 signaling pathway head development forebrain development animal organ development brain development telencephalon cell migration central nervous system development forebrain cell migration cell migration telencephalon development cell motility negative regulation of locomotion regulation of cell motility negative regulation of biological process regulation of leukocyte adhesion to vascular endothelial cell leukocyte cell-cell adhesion negative regulation of cell adhesion leukocyte tethering or rolling negative regulation of leukocyte tethering or rolling cell adhesion cell-cell adhesion negative regulation of cellular extravasation negative regulation of cellular process cellular extravasation regulation of cell migration regulation of cell-cell adhesion regulation of immune system process negative regulation of cell migration regulation of cell adhesion regulation of leukocyte migration negative regulation of leukocyte adhesion to vascular endothelial cell leukocyte migration regulation of leukocyte tethering or rolling negative regulation of leukocyte migration negative regulation of leukocyte cell-cell adhesion negative regulation of immune system process leukocyte adhesion to vascular endothelial cell negative regulation of cell-cell adhesion regulation of leukocyte cell-cell adhesion negative regulation of cell motility regulation of cellular extravasation monoamine transport regulation of localization nitrogen compound transport regulation of catecholamine secretion transport organic hydroxy compound transport positive regulation of secretion by cell dopamine transport positive regulation of amine transport localization secretion by cell regulation of secretion by cell catecholamine transport positive regulation of secretion signal release secretion regulation of transport positive regulation of catecholamine secretion export from cell cell-cell signaling dopamine secretion establishment of localization positive regulation of dopamine secretion regulation of secretion catecholamine secretion amine transport positive regulation of transport regulation of amine transport regulation of dopamine secretion defense response response to stress vasculature development regulation of vasculature development circulatory system development positive regulation of vasculature development regulation of leukocyte apoptotic process dendritic cell apoptotic process negative regulation of dendritic cell apoptotic process negative regulation of programmed cell death leukocyte apoptotic process regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of leukocyte apoptotic process regulation of dendritic cell apoptotic process apoptotic process programmed cell death positive regulation of cell adhesion sensory perception of temperature stimulus detection of temperature stimulus involved in sensory perception response to temperature stimulus detection of temperature stimulus detection of temperature stimulus involved in sensory perception of pain positive regulation of neuron differentiation regulation of neuron differentiation positive regulation of monocyte chemotaxis positive regulation of cell migration regulation of monocyte chemotaxis positive regulation of cell motility myeloid leukocyte migration positive regulation of mononuclear cell migration regulation of mononuclear cell migration positive regulation of immune system process cell chemotaxis regulation of leukocyte chemotaxis positive regulation of leukocyte migration positive regulation of leukocyte chemotaxis monocyte chemotaxis cellular response to chemical stimulus mononuclear cell migration leukocyte chemotaxis regulation of calcium ion import regulation of calcium ion transport positive regulation of calcium ion transport positive regulation of calcium ion import regulation of monoatomic ion transport calcium ion transport metal ion transport positive regulation of monoatomic ion transport monoatomic ion transport calcium ion import monoatomic cation transport regulation of metal ion transport regulation of lymphocyte migration positive regulation of lymphocyte migration positive regulation of T cell migration lymphocyte migration regulation of T cell migration T cell migration response to decreased oxygen levels response to hypoxia response to oxygen levels adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway adenylate cyclase-modulating G protein-coupled receptor signaling pathway neuron migration animal organ regeneration regeneration negative regulation of signaling negative regulation of intracellular signal transduction regulation of cellular response to stress regulation of signal transduction regulation of intrinsic apoptotic signaling pathway in response to DNA damage regulation of intrinsic apoptotic signaling pathway intracellular signal transduction negative regulation of cell communication cellular response to stress regulation of intracellular signal transduction negative regulation of apoptotic signaling pathway regulation of response to stress intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway DNA damage response regulation of cell communication regulation of apoptotic signaling pathway cell population proliferation positive regulation of cell population proliferation endothelial cell proliferation positive regulation of epithelial cell proliferation regulation of endothelial cell proliferation regulation of cell population proliferation positive regulation of endothelial cell proliferation regulation of epithelial cell proliferation epithelial cell proliferation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001811	Chemokine interleukin-8-like domain	Domain
A	IPR036048	Chemokine interleukin-8-like superfamily	Homologous Superfamily
A	IPR039809	Chemokine beta/gamma/delta	Family
A	IPR033899	CXC Chemokine domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.