6EHT

Modulation of PCNA sliding surface by p15PAF suggests a suppressive mechanism for cisplatin-induced DNA lesion bypass by pol eta holoenzyme


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.327 
  • R-Value Work: 0.261 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

p15PAF binding to PCNA modulates the DNA sliding surface

De March, M.Barrera-Vilarmau, S.Mentegari, E.Merino, N.Bressan, E.Maga, G.Crehuet, R.Onesti, S.Blanco, F.J.De Biasio, A.

(2018) Nucleic Acids Res. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Proliferating cell nuclear antigen
A, B
254Homo sapiensMutation(s): 0 
Gene Names: PCNA
Find proteins for P12004 (Homo sapiens)
Go to Gene View: PCNA
Go to UniProtKB:  P12004
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Proliferating cell nuclear antigen
C
256Homo sapiensMutation(s): 0 
Gene Names: PCNA
Find proteins for P12004 (Homo sapiens)
Go to Gene View: PCNA
Go to UniProtKB:  P12004
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
PCNA-associated factor
D, E
20Homo sapiensMutation(s): 0 
Gene Names: PCLAF (KIAA0101, NS5ATP9, PAF)
Find proteins for Q15004 (Homo sapiens)
Go to Gene View: PCLAF
Go to UniProtKB:  Q15004
Entity ID: 4
MoleculeChainsLengthOrganism
DNA (5'-D(P*AP*TP*AP*CP*GP*AP*TP*GP*GP*G)-3')F10Homo sapiens
Entity ID: 5
MoleculeChainsLengthOrganism
DNA (5'-D(P*CP*CP*CP*AP*TP*CP*GP*TP*AP*T)-3')G10Homo sapiens
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.327 
  • R-Value Work: 0.261 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 75.993α = 90.00
b = 42.300β = 102.70
c = 141.827γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
MOLREPphasing
SCALAdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-08-08
    Type: Initial release