6D9W

Crystal structure of Deinococcus radiodurans MntH, an Nramp-family transition metal transporter, in the inward-open apo state


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.941 Å
  • R-Value Free: 0.309 
  • R-Value Work: 0.271 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Re-refinement Note

This entry reflects an alternative modeling of the original data in: 

  • 5KTE - determined by Bane, L.B., Gaudet, R., Weihofen, W.A., Singharoy, A.  

Literature

Structures in multiple conformations reveal distinct transition metal and proton pathways in an Nramp transporter.

Bozzi, A.T.Zimanyi, C.M.Nicoludis, J.M.Lee, B.K.Zhang, C.H.Gaudet, R.

(2019) Elife 8: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Divalent metal cation transporter MntH
A
420Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)Mutation(s): 7 
Gene Names: mntH
Find proteins for Q9RTP8 (Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422))
Go to UniProtKB:  Q9RTP8
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Fab Heavy Chain
H
213N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Fab Light Chain
L
213N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OS
Query on OS

Download SDF File 
Download CCD File 
A, H
OSMIUM ION
Os
XQBKHDFIPARBOX-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.941 Å
  • R-Value Free: 0.309 
  • R-Value Work: 0.271 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 113.131α = 90.00
b = 132.077β = 90.00
c = 220.995γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
HKL-2000data reduction
PHENIXrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited States9P41GM104601
National Institutes of Health/National Institute of General Medical SciencesUnited States1R01GM120996
National Science Foundation (United States)United StatesNSF-MCA93S028

Revision History 

  • Version 1.0: 2019-02-13
    Type: Initial release
  • Version 1.1: 2019-02-20
    Type: Data collection, Database references