6D04

Cryo-EM structure of a Plasmodium vivax invasion complex essential for entry into human reticulocytes; two molecules of parasite ligand, subclass 1.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.74 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Cryo-EM structure of an essential Plasmodium vivax invasion complex.

Gruszczyk, J.Huang, R.K.Chan, L.J.Menant, S.Hong, C.Murphy, J.M.Mok, Y.F.Griffin, M.D.W.Pearson, R.D.Wong, W.Cowman, A.F.Yu, Z.Tham, W.H.

(2018) Nature 559: 135-139


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Transferrin receptor protein 1
A, B
659Homo sapiensMutation(s): 0 
Gene Names: TFRC
Find proteins for P02786 (Homo sapiens)
Go to Gene View: TFRC
Go to UniProtKB:  P02786
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Serotransferrin
C, D
698Homo sapiensMutation(s): 0 
Gene Names: TF
Find proteins for P02787 (Homo sapiens)
Go to Gene View: TF
Go to UniProtKB:  P02787
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Reticulocyte binding protein 2, putative
E, F
820Plasmodium vivax (strain Salvador I)Mutation(s): 0 
Find proteins for A5K736 (Plasmodium vivax (strain Salvador I))
Go to UniProtKB:  A5K736
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A, B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
FE
Query on FE

Download SDF File 
Download CCD File 
C, D
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C, D
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
CO3
Query on CO3

Download SDF File 
Download CCD File 
C, D
CARBONATE ION
C O3
BVKZGUZCCUSVTD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.74 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-06-20
    Type: Initial release
  • Version 1.1: 2018-06-27
    Type: Data collection, Database references
  • Version 1.2: 2018-07-11
    Type: Data collection, Database references