6BKD

Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 6a bound to broadly neutralizing antibody AR3D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.268 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structures of HCV genotype 6 E2 core and human VH1-69 broadly neutralizing antibodies

Tzarum, N.Giang, E.Kong, L.He, L.Prentoe, J.Augestad, E.Hua, Y.Castillo, S.Lauer, G.Bukh, Z.wilson, I.A.Law, M.

(2019) Sci Adv --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Polyprotein
E
189Recombinant Hepatitis C virus HK6a/JFH-1Mutation(s): 1 
Find proteins for B9V0E2 (Recombinant Hepatitis C virus HK6a/JFH-1)
Go to UniProtKB:  B9V0E2
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Fab AR3D heavy chain
H
234Homo sapiensMutation(s): 0 
Find proteins for S6B2A6 (Homo sapiens)
Go to UniProtKB:  S6B2A6
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Fab AR3D light chain
L
212Homo sapiensMutation(s): 0 
Gene Names: IGK@
Find proteins for Q6PIL8 (Homo sapiens)
Go to UniProtKB:  Q6PIL8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download SDF File 
Download CCD File 
E
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.268 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 37.318α = 90.00
b = 60.392β = 88.00
c = 148.082γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHASERphasing
SCALEPACKdata scaling
Blu-Icedata collection
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of HealthUnited StatesAl123365
National Institutes of HealthUnited StatesAl106005

Revision History 

  • Version 1.0: 2018-12-26
    Type: Initial release