Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - ABC Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 3-mer -A2B 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 69691.66 
• Atom Count: 4569 
• Residue Count: 635 
• Unique protein chains: 3

6BKB

Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 6a bound to broadly neutralizing antibody AR3A

• DOI: 10.2210/pdb6BKB/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Recombinant Hepatitis C virus HK6a/JFH-1, Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): 1 


• Deposited: 2017-11-08 Released: 2018-12-26 
• Deposition Author(s): Tzarum, N., Wilson, I.A., Law, M.
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases 

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.799 Å
• R-Value Free: 0.267 
• R-Value Work: 0.230 

Literature

Structures of HCV genotype 6 E2 core and human VH1-69 broadly neutralizing antibodies

Tzarum, N., Giang, E., Kong, L., He, L., Prentoe, J., Augestad, E., Hua, Y., Castillo, S., Lauer, G., Bukh, Z., wilson, I.A., Law, M.

(2019) Sci Adv --: --

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Fab AR3A heavy chain	H	232	Homo sapiens	Mutation(s): 0
Find proteins for P0DOX5 (Homo sapiens) Go to UniProtKB:  P0DOX5

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
Polyprotein	E	189	Recombinant Hepatitis C virus HK6a/JFH-1	Mutation(s): 1
Find proteins for B9V0E2 (Recombinant Hepatitis C virus HK6a/JFH-1) Go to UniProtKB:  B9V0E2

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
Fab AR3A light chain	L	214	Homo sapiens	Mutation(s): 0  Gene Names: IGK@
Find proteins for Q6PIL8 (Homo sapiens) Go to UniProtKB:  Q6PIL8

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
NAG	E	N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.799 Å
• R-Value Free: 0.267 
• R-Value Work: 0.230 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 60.922	α = 90.00
b = 67.559	β = 90.00
c = 218.353	γ = 90.00

Software Package:

Software Name	Purpose
Blu-Ice	data collection
HKL-2000	data reduction
PHASER	phasing
PHENIX	refinement
SCALEPACK	data scaling

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2017-11-08 
• Released Date: 2018-12-26 
• Deposition Author(s): Tzarum, N., Wilson, I.A., Law, M.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases	United States	Al123365
National Institutes of Health/National Institute Of Allergy and Infectious Diseases	United States	Al106005

Revision History 

• Version 1.0: 2018-12-26
  Type: Initial release