Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - ABC Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 3-mer -A2B 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 69046.23 
• Atom Count: 4426 
• Residue Count: 634 
• Unique protein chains: 3

6BKC

Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 6a bound to broadly neutralizing antibody AR3B

• DOI: 10.2210/pdb6BKC/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens, Recombinant Hepatitis C virus HK6a/JFH-1
• Expression System: Homo sapiens
• Mutation(s): 1 


• Deposited: 2017-11-08 Released: 2018-12-26 
• Deposition Author(s): Tzarum, N., Wilson, I.A., Law, M.
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases 

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.6 Å
• R-Value Free: 0.276 
• R-Value Work: 0.231 

Literature

Structures of HCV genotype 6 E2 core and human VH1-69 broadly neutralizing antibodies

Tzarum, N., Giang, E., Kong, L., He, L., Prentoe, J., Augestad, E., Hua, Y., Castillo, S., Lauer, G., Bukh, Z., wilson, I.A., Law, M.

(2019) Sci Adv --: --

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Fab AR3B heavy chain	H	230	Homo sapiens	Mutation(s): 0
Find proteins for P0DOX5 (Homo sapiens) Go to UniProtKB:  P0DOX5

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
Fab AR3B light chain	L	215	Homo sapiens	Mutation(s): 0
Find proteins for Q8TCD0 (Homo sapiens) Go to UniProtKB:  Q8TCD0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
Polyprotein	E	189	Recombinant Hepatitis C virus HK6a/JFH-1	Mutation(s): 1
Find proteins for B9V0E2 (Recombinant Hepatitis C virus HK6a/JFH-1) Go to UniProtKB:  B9V0E2

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
NAG	E	N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.6 Å
• R-Value Free: 0.276 
• R-Value Work: 0.231 
• Space Group: P 1 2₁ 1

Unit Cell:

Length (Å)	Angle (°)
a = 36.447	α = 90.00
b = 59.437	β = 90.29
c = 143.923	γ = 90.00

Software Package:

Software Name	Purpose
PHENIX	refinement
PHASES	phasing
SCALEPACK	data scaling
HKL-2000	data reduction
Blu-Ice	data collection

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2017-11-08 
• Released Date: 2018-12-26 
• Deposition Author(s): Tzarum, N., Wilson, I.A., Law, M.

---

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases	United States	Al123365
National Institutes of Health/National Institute Of Allergy and Infectious Diseases	United States	Al106005

Revision History 

• Version 1.0: 2018-12-26
  Type: Initial release