6B9C

Superfolder Green Fluorescent Protein with 4-nitro-L-phenylalanine at the chromophore (position 66)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.695 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.161 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Characterization of the structures and photophysical properties of 66pNO2F and 66pCNF superfolder GFP

Olenginski, G.M.Piacentini, J.Runko, N.Harris, D.Brewer, S.H.Phillips-Piro, C.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Green fluorescent protein
A
237Aequorea victoriaMutation(s): 6 
Gene Names: GFP
Find proteins for P42212 (Aequorea victoria)
Go to UniProtKB:  P42212
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CO2
Query on CO2

Download SDF File 
Download CCD File 
A
CARBON DIOXIDE
C O2
CURLTUGMZLYLDI-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
CQ2
Query on CQ2
A
L-PEPTIDE LINKINGC15 H18 N4 O4GLY, TYR, GLY
GMO
Query on GMO
A
L-peptide linkingC15 H16 N4 O6THR, TYR, GLY
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.695 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.161 
  • Space Group: P 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 55.438α = 90.00
b = 55.438β = 90.00
c = 165.746γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
HKL-2000data reduction
PHENIXrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR15GM121984

Revision History 

  • Version 1.0: 2018-10-17
    Type: Initial release