6AVG

Crystal structure of the KFJ37 TCR-NY-ESO-1-HLA-B*07:02 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Divergent T-cell receptor recognition modes of a HLA-I restricted extended tumour-associated peptide.

Chan, K.F.Gully, B.S.Gras, S.Beringer, D.X.Kjer-Nielsen, L.Cebon, J.McCluskey, J.Chen, W.Rossjohn, J.

(2018) Nat Commun 9: 1026-1026


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
H, A
107Homo sapiensMutation(s): 0 
Gene Names: B2M
Find proteins for P61769 (Homo sapiens)
Go to Gene View: B2M
Go to UniProtKB:  P61769
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
T-cell receptor alpha variable 4,TCR alpha chain
C, B
202N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
T-cell receptor beta variable 9,TCR beta chain
D, E
245N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
HLA class I histocompatibility antigen, B-7 alpha chain
G, F
362Homo sapiensMutation(s): 0 
Gene Names: HLA-B (HLAB)
Find proteins for P01889 (Homo sapiens)
Go to Gene View: HLA-B
Go to UniProtKB:  P01889
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
ALA-PRO-ARG-GLY-PRO-HIS-GLY-GLY-ALA-ALA-SER-GLY-LEU
Q, P
13Homo sapiensMutation(s): 0 
Gene Names: CTAG1A, CTAG1B (CTAG, CTAG1, ESO1, LAGE2, LAGE2A, LAGE2B)
Find proteins for P78358 (Homo sapiens)
Go to Gene View: CTAG1A CTAG1B
Go to UniProtKB:  P78358
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.193 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 66.805α = 94.22
b = 74.863β = 97.88
c = 96.276γ = 90.16
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXrefinement
PHASERphasing
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-02-28
    Type: Initial release
  • Version 1.1: 2018-03-28
    Type: Data collection, Database references