Biological Assembly 1  

 3D View: Structure | Electron Density

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 4-mer - ABCD 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: authors reported there is no experimental evidence

Biological Assembly 2  

 3D View: Structure | Electron Density

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 4-mer - ABCD 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 208515.64 
• Atom Count: 13197 
• Residue Count: 1858 
• Unique protein chains: 5

6AVG

Crystal structure of the KFJ37 TCR-NY-ESO-1-HLA-B*07:02 complex

• DOI: 10.2210/pdb6AVG/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens
• Expression System: Escherichia coli


• Deposited: 2017-09-02 Released: 2018-02-28 
• Deposition Author(s): Gully, B.S., Gras, S., Rossjohn, J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.6 Å
• R-Value Free: 0.248 
• R-Value Work: 0.193 

Literature

Divergent T-cell receptor recognition modes of a HLA-I restricted extended tumour-associated peptide.

Chan, K.F., Gully, B.S., Gras, S., Beringer, D.X., Kjer-Nielsen, L., Cebon, J., McCluskey, J., Chen, W., Rossjohn, J.

(2018) Nat Commun 9: 1026-1026

• PubMed: 29531227 
• Primary Citation of Related Structures:  
  6AT6, 6AT5, 6AVF

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Beta-2-microglobulin	H, A	107	Homo sapiens	Mutation(s): 0  Gene Names: B2M
Find proteins for P61769 (Homo sapiens) Go to Gene View: B2M Go to UniProtKB:  P61769

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
T-cell receptor alpha variable 4,TCR alpha chain	C, B	202	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
T-cell receptor beta variable 9,TCR beta chain	D, E	245	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details
HLA class I histocompatibility antigen, B-7 alpha chain	G, F	362	Homo sapiens	Mutation(s): 0  Gene Names: HLA-B (HLAB)
Find proteins for P01889 (Homo sapiens) Go to Gene View: HLA-B Go to UniProtKB:  P01889

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details
ALA-PRO-ARG-GLY-PRO-HIS-GLY-GLY-ALA-ALA-SER-GLY-LEU	Q, P	13	Homo sapiens	Mutation(s): 0  Gene Names: CTAG1A, CTAG1B (CTAG, CTAG1, ESO1, LAGE2, LAGE2A, LAGE2B)
Find proteins for P78358 (Homo sapiens) Go to Gene View: CTAG1A CTAG1B Go to UniProtKB:  P78358

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.6 Å
• R-Value Free: 0.248 
• R-Value Work: 0.193 
• Space Group: P 1

Unit Cell:

Length (Å)	Angle (°)
a = 66.805	α = 94.22
b = 74.863	β = 97.88
c = 96.276	γ = 90.16

Software Package:

Software Name	Purpose
XDS	data reduction
PHENIX	refinement
PHASER	phasing
SCALA	data scaling

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2017-09-02 
• Released Date: 2018-02-28 
• Deposition Author(s): Gully, B.S., Gras, S., Rossjohn, J.

Revision History 

• Version 1.0: 2018-02-28
  Type: Initial release
• Version 1.1: 2018-03-28
  Type: Data collection, Database references