6A9F

Crystal structure of a cyclase from Fischerella sp. TAU in complex with 4-(1H-Indol-3-yl)butan-2-one


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The Crystal Structure of a Class of Cyclases that Catalyze the Cope Rearrangement

Chen, C.C.Hu, X.Tang, X.Yang, Y.Ko, T.P.Gao, J.Zheng, Y.Huang, J.W.Yu, Z.Li, L.Han, S.Cai, N.Zhang, Y.Liu, W.Guo, R.T.

(2018) Angew. Chem. Int. Ed. Engl. 57: 15060-15064


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
aromatic prenyltransferase
A, B, C, D
223Fischerella sp. SAG 46.79Mutation(s): 0 
Gene Names: fisC
Find proteins for A0A1P8VSL7 (Fischerella sp. SAG 46.79)
Go to UniProtKB:  A0A1P8VSL7
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
D
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A, B, C, D
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, C, D
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
9BF
Query on 9BF

Download SDF File 
Download CCD File 
B
4-(1~{H}-indol-3-yl)butan-2-one
C12 H13 N O
ZJCUUXGLZWBCIL-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.188 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 39.729α = 104.56
b = 53.285β = 91.14
c = 94.882γ = 94.16
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
PHASERphasing
HKL-2000data scaling
HKL-2000data reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-12-19
    Type: Initial release
  • Version 1.1: 2018-12-26
    Type: Data collection, Structure summary