5YVK

Crystal structure of a cyclase Famc1 from Fischerella ambigua UTEX 1903


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.292 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The Crystal Structure of a Class of Cyclases that Catalyze the Cope Rearrangement

Chen, C.C.Hu, X.Tang, X.Yang, Y.Ko, T.P.Gao, J.Zheng, Y.Huang, J.W.Yu, Z.Li, L.Han, S.Cai, N.Zhang, Y.Liu, W.Guo, R.T.

(2018) Angew. Chem. Int. Ed. Engl. 57: 15060-15064


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
cyclase
A
225Fischerella ambigua UTEX 1903Mutation(s): 0 
Find proteins for V5TER4 (Fischerella ambigua UTEX 1903)
Go to UniProtKB:  V5TER4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
0HZ
Query on 0HZ

Download SDF File 
Download CCD File 
A
amino({3-[(3S,8aS)-1,4-dioxooctahydropyrrolo[1,2-a]pyrazin-3-yl]propyl}amino)methaniminium
CI-4; [cyclo-(l-Arg-d-Pro)]
C11 H20 N5 O2
ZRJHYOXNWCMGMW-JGVFFNPUSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.292 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.166 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 54.845α = 90.00
b = 54.845β = 90.00
c = 152.562γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHENIXrefinement
PDB_EXTRACTdata extraction
PHENIXphasing
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-11-07
    Type: Initial release
  • Version 1.1: 2018-11-21
    Type: Data collection, Database references
  • Version 1.2: 2018-12-26
    Type: Data collection, Structure summary