5ZYV

Crystal structure of human MGME1 with single strand DNA2 and Ca2+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.72 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.212 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

crystal structure of human MGME1 with single strand DNA2 and Ca2+

Yang, C.Gan, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Mitochondrial genome maintenance exonuclease 1
A
254Homo sapiensMutation(s): 1 
Gene Names: MGME1 (C20orf72, DDK1)
EC: 3.1.-.-
Find proteins for Q9BQP7 (Homo sapiens)
Go to Gene View: MGME1
Go to UniProtKB:  Q9BQP7
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(P*CP*AP*AP*CP*AP*AP*T)-3')E15unidentified
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

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Download CCD File 
A
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
CA
Query on CA

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Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.72 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.212 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 81.282α = 90.00
b = 106.151β = 90.00
c = 33.391γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
HKL-3000data scaling
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-05-28 
  • Released Date: 2018-09-19 
  • Deposition Author(s): Yang, C., Gan, J.

Revision History 

  • Version 1.0: 2018-09-19
    Type: Initial release