5ZYU

Crytal struture of humanMGME1 with single strand DNA2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.752 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.173 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

crytal struture of humanMGME1 with single strand DNA2

Yang, C.Gan, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Mitochondrial genome maintenance exonuclease 1
A, B
254Homo sapiensMutation(s): 0 
Gene Names: MGME1 (C20orf72, DDK1)
EC: 3.1.-.-
Find proteins for Q9BQP7 (Homo sapiens)
Go to Gene View: MGME1
Go to UniProtKB:  Q9BQP7
Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(P*CP*AP*AP*CP*AP*AP*CP*A)-3')E,C15unidentified
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.752 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.173 
  • Space Group: P 32
Unit Cell:
Length (Å)Angle (°)
a = 80.714α = 90.00
b = 80.714β = 90.00
c = 79.769γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PHASERphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-05-28 
  • Released Date: 2018-09-19 
  • Deposition Author(s): Yang, C., Gan, J.

Revision History 

  • Version 1.0: 2018-09-19
    Type: Initial release