5Z0M

Crystal structure of copper-bound H63F-mutated tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 12 h at 298 K


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.207 
  • R-Value Observed: 0.142 

wwPDB Validation 3D Report Full Report



Literature

Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein

Matoba, Y.Sugiyama, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TyrosinaseA281Streptomyces castaneoglobisporusMutation(s): 1 
Gene Names: tyrC
EC: 1.14.18.1
Find proteins for Q83WS2 (Streptomyces castaneoglobisporus)
Explore Q83WS2 
Go to UniProtKB:  Q83WS2
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
MelCB134Streptomyces castaneoglobisporusMutation(s): 0 
Gene Names: orf378
Find proteins for Q83WS1 (Streptomyces castaneoglobisporus)
Explore Q83WS1 
Go to UniProtKB:  Q83WS1
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CU
Query on CU

Download CCD File 
A, B
COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
 Ligand Interaction
NO3
Query on NO3

Download CCD File 
A, B
NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
DAH
Query on DAH
BL-PEPTIDE LINKINGC9 H11 N O4PHE
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.207 
  • R-Value Observed: 0.142 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 64.91α = 90
b = 97.35β = 90
c = 54.92γ = 90
Software Package:
Software NamePurpose
SHELXL-97refinement
CNSphasing
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
KAKENHIJapan25109530, 15H009470

Revision History 

  • Version 1.0: 2018-12-26
    Type: Initial release