5YH5

The crystal structure of Staphylococcus aureus CntA in apo form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Mechanistic insights into staphylopine-mediated metal acquisition

Song, L.Zhang, Y.Chen, W.Gu, T.Zhang, S.Y.Ji, Q.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: 3942-3947


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nickel ABC transporter substrate-binding protein
A
507Staphylococcus aureus (strain NCTC 8325)Mutation(s): 0 
Find proteins for Q2FVE7 (Staphylococcus aureus (strain NCTC 8325))
Go to UniProtKB:  Q2FVE7
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
A
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.190 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 149.395α = 90.00
b = 149.395β = 90.00
c = 53.635γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
PHASERphasing
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2017-09-27 
  • Released Date: 2018-03-28 
  • Deposition Author(s): Song, L., Ji, Q.

Revision History 

  • Version 1.0: 2018-03-28
    Type: Initial release
  • Version 1.1: 2018-04-11
    Type: Data collection, Database references, Derived calculations, Structure summary
  • Version 1.2: 2018-04-25
    Type: Data collection, Database references, Derived calculations, Structure summary