5YAD

Crystal structure of Marf1 Lotus domain from Mus musculus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.180 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Ribonuclease activity of MARF1 controls oocyte RNA homeostasis and genome integrity in mice.

Yao, Q.Cao, G.Li, M.Wu, B.Zhang, X.Zhang, T.Guo, J.Yin, H.Shi, L.Chen, J.Yu, X.Zheng, L.Ma, J.Su, Y.Q.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: 11250-11255


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Meiosis regulator and mRNA stability factor 1
A, B
75Mus musculusMutation(s): 0 
Gene Names: Marf1 (Kiaa0430, Lkap)
Find proteins for Q8BJ34 (Mus musculus)
Go to UniProtKB:  Q8BJ34
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.180 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 54.974α = 90.00
b = 53.959β = 90.00
c = 67.450γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data scaling
PHENIXphasing
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-10-03
    Type: Initial release
  • Version 1.1: 2018-11-14
    Type: Data collection, Database references