Ribonuclease activity of MARF1 controls oocyte RNA homeostasis and genome integrity in mice.

Yao, Q.; Cao, G.; Li, M.; Wu, B.; Zhang, X.; Zhang, T.; Guo, J.; Yin, H.; Shi, L.; Chen, J.; Yu, X.; Zheng, L.; Ma, J.; Su, Y.Q.

doi:10.2210/pdb5yaa/pdb

Macromolecule Content

Total Structure Weight: 75135.96
Atom Count: 4863
Residue Count: 652
Unique protein chains: 1

5YAA

Crystal structure of Marf1 NYN domain from Mus musculus

DOI: 10.2210/pdb5YAA/pdb

Classification: HYDROLASE
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): 2

Deposited: 2017-08-31 Released: 2018-10-03
Deposition Author(s): Yao, Q.Q., Wu, B.X., Ma, J.B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.283
R-Value Work: 0.232

wwPDB Validation3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Ribonuclease activity of MARF1 controls oocyte RNA homeostasis and genome integrity in mice.

Yao, Q., Cao, G., Li, M., Wu, B., Zhang, X., Zhang, T., Guo, J., Yin, H., Shi, L., Chen, J., Yu, X., Zheng, L., Ma, J., Su, Y.Q.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: 11250-11255

PubMed: 30333187 Search on PubMed
Primary Citation of Related Structures:
5YAD

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Meiosis regulator and mRNA stability factor 1	A, B, C, D	163	Mus musculus	Mutation(s): 2 Gene Names: Marf1 (Kiaa0430, Lkap)
Find proteins for Q8BJ34 (Mus musculus) Go to UniProtKB: Q8BJ34
Protein Feature View Full Protein Feature View for Q8BJ34

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
GOL Query on GOL Download SDF File Download CCD File	A, B, C, D	GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.283
R-Value Work: 0.232
Space Group: H 3

Unit Cell:

Length (Å)	Angle (°)
a = 163.470	α = 90.00
b = 163.470	β = 90.00
c = 56.151	γ = 120.00

Software Package:

Software Name	Purpose
PHENIX	phasing
HKL-2000	data reduction
PHENIX	refinement
HKL-2000	data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History

Deposition Data

Deposited Date: 2017-08-31
Released Date: 2018-10-03
Deposition Author(s): Yao, Q.Q., Wu, B.X., Ma, J.B.

Revision History

Version 1.0: 2018-10-03
Type: Initial release
Version 1.1: 2018-11-14
Type: Data collection, Database references

Prepare Data

Validate Data

Deposit Data

Deposition Help & Resources

148969 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

5YAA

Crystal structure of Marf1 NYN domain from Mus musculus

Ribonuclease activity of MARF1 controls oocyte RNA homeostasis and genome integrity in mice.

Entity ID: 1

Experimental Data

Structure Validation

Deposition Data

Revision History