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Crystal structure of Marf1 Lotus domain from Mus musculus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 1.5M (NH4)2SO4, 0.1M Citrate pH5.5
Crystal Properties Matthews coefficient Solvent content 3.09 60.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.974 α = 90 b = 53.959 β = 90 c = 67.45 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-04-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97853 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 50 95.9 2.545 6.5 37069
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.76 30 18760 1008 96.58 0.18159 0.17968 0.1916 0.21625 0.2271 RANDOM 32.134
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 -0.66 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.256 r_dihedral_angle_4_deg 14.01 r_dihedral_angle_3_deg 12.25 r_long_range_B_other 8.451 r_long_range_B_refined 8.417 r_scangle_other 6.476 r_dihedral_angle_1_deg 6.401 r_mcangle_it 4.703 r_mcangle_other 4.699 r_scbond_other 4.478
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.256 r_dihedral_angle_4_deg 14.01 r_dihedral_angle_3_deg 12.25 r_long_range_B_other 8.451 r_long_range_B_refined 8.417 r_scangle_other 6.476 r_dihedral_angle_1_deg 6.401 r_mcangle_it 4.703 r_mcangle_other 4.699 r_scbond_other 4.478 r_scbond_it 4.477 r_mcbond_it 3.391 r_mcbond_other 3.338 r_angle_refined_deg 2.104 r_angle_other_deg 1.08 r_chiral_restr 0.135 r_bond_refined_d 0.023 r_gen_planes_refined 0.011 r_bond_other_d 0.004 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1110 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHENIX phasing